Sequence
atgc intronic sequence ATGC exonic sequenceTGTCCAGTCATTGGCAACTGAAGTTCGAGCTGCTTCCTTTACCAAAATAGAAGATCTGGTGGCCTTTGTGAACTGGTTAGATGAAGAGCTCTCCTTCTTGgtatgcctttaaaacttcatctgttaaactggctattcttttcttttatagctgctaaacatgattctatgtcatggtattcctaatttgatcatttattccaacccttttcatcaatttttttcccatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g02860.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G11260.1 (Glycine max), 5'ss of exon 5
TGTCCAGTCATTGGCAACTGAAGTTCGAGCTGCTTCCTTTACCAAAATAGAAGATCTGGTGGCCTTTGTGAACTGGTTAGATGAAGAGCTCTCCTTCTTGgtatgcctttaaaacttcatctgttaaactggctattcttttcttttatagctgctaaacatgattctatgtcatggtattcctaatttgatcatttattccaacccttttcatcaatttttttcccatcag
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TGTCATGTCCTTGGCAGCTGAAGTTCGAGCAGCCTCCTTCTCAGATATTAATGACTTGGTGGCCTTTGTGAACTGGCTAGATGAGGAACTTTCCTTCTTGgtatgcctttagg-tgtcatta--catattaatcagtgaagatttttgtgagcaa-gcacagaagtcagcacctttgtgctctcta---aaaaattcaaaccattcc-------------------------
upper sequence: Vv01s0011g02860.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G22620.1 (Glycine max), 5'ss of exon 5
TGTCCAGTCATTGGCAACTGAAGTTCGAGCTGCTTCCTTTACCAAAATAGAAGATCTGGTGGCCTTTGTGAACTGGTTAGATGAAGAGCTCTCCTTCTTGgtatgcctttaaaacttcatctgttaaactggctattcttttcttttatagctgctaaacatgattctatgtcatggtattcctaatttgatcatttattccaacccttttcatcaatttttttcccatcag
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TGTCATGTCCTTGGCAGCTGAAGTTCGAGCAGCCTCCTTCTCAGATATTAATGACTTGGTGGCCTTTGTGAACTGGCTAGATGAGGAACTTTCCTTCTTGgtatgcctttagg-tgtcatta--catattcattagtaaagacttttgtgagcaa-gcacagaagtcaacacctttgtgctc---gctaaaaaatttaaaccattcc-------------------------
upper sequence: Vv01s0011g02860.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G32630.1 (Glycine max), 5'ss of exon 4
TGTCCAGTCATTGGCAACTGAAGTTCGAGCTGCTTCCTTTACCAAAATAGAAGATCTGGTGGCCTTTGTGAACTGGTTAGATGAAGAGCTCTCCTTCTTGgtatgcctttaaaacttcatctgttaaactggctattcttttcttttatagctgctaaacatgattctatgtc-atggtattcctaatttga--tcatttattccaacccttttcatcaatttttttcccatcag
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TGTCATCTCCTTGGCAACTGAAGTTAGAGCAGCCTCGTTCTCTAAGATTGAAGATCTGGTGGCTTTTGTGAACTGGCTAGATGAGGAACTTTCCTTCTTGgtaagtgtt---agtgtcattt----------ctcctccatcattaacaagcttctaaaaacaaattcatatagattgtagatcttgggagaaggcatggaagtgtatccttt----------------------
upper sequence: Vv01s0011g02860.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G25690.1 (Arabidopsis thaliana), 5'ss of exon 5
TGTCCAGTCATTGGCAACTGAAGTTCGAGCTGCTTCCTTTACCAAAATAGAAGATCTGGTGGCCTTTGTGAACTGGTTAGATGAAGAGCTCTCCTTCTTGgtatgcctttaaaacttcatctgttaaactggctattcttttcttttatagctgctaaacatgattctatgtcatggtattcctaatttgatcatttattccaacccttttcatcaatttttttcccatcag
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TGTACAGTCGTTAGCAACTGAAGTCCGAGCTTCTTCTTTCACCGACATAGAAGATCTCTTGGCGTTCGTTAGCTGGCTAGATGAAGAGCTCTCCTTCTTGgt----cattaa---ctcctcttttcaac-----attactttct-----aaccgctatttcggttttttttttaaa--actcacggatcaatc------tctatcgttttgtgtag----------------
upper sequence: Vv01s0011g02860.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S224_116V6.1 (Physcomitrella patens), 5'ss of exon 4
TGTCCAGTCATTGGCAACTGAAGTTCGAGCTGCTTCCTTTACCAAAATAGAAGATCTGGTGGCCTTTGTGAACTGGTTAGATGAAGAGCTCTCCTTCTTGgtatgcctttaaaacttcatctgttaaactggctattcttttcttttatagctgctaaacatgattctatgtcatggtattcctaatttgatcatttattccaacccttttcatcaatttttttcccatcag
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TGTCATGTCACTAGCAGCTGAAGTGAGAGCTGCTGTGTATGGTGACATTAAAGATGTTGTGGAGTTTGTGAATTGGCTAGATGAAGAGCTCTCCTTTTTGgtacgttc-----atcttagttactgattttgtaatctatcttgctaattctcatt--------tcttgcttgctgatcccagcaatgtcataacacatatcaagtgccttca-------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352768423|gb|FQ469599.1|FQ469599EST: GGTTAGATGAAGAGCTTTCCTTTTTG GTTGATGAACGGGCCGTTCTCAAGCACTTTGATTGGCCTGAAGGGAAAGCA
genomic: GGTTAGATGAAGAGCTCTCCTTCTTGgtatgccttt ... ttcccatcagGTTGATGAACGGGCCGTTCTCAAGCACTTTGATTGGCCTGAAGGGAAAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTCCAGTCATTGGCAACTGAAGTTCGAGCTGCTTCCTTTACCAAAATAGAAGATCTGGTGGCCTTTGTGAACTGGTTAGATGAAGAGCTCTCCTTCTTGgtatgcctttaaaacttcatctgttaaactggctattcttttcttttatagctgctaaacatgattctatgtcatggtattcctaatttgatcatttattccaacccttttcatcaatttttttcccatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT