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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGATACTGGGTCAACTTCTCTATGCAGCCAGATTAGTGGCAGAGAAAGAAGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttgatctcattctgtacaatttctctaggttattcataagtgattccatcatgcgtaatcatctcttgctccag

Basic information

species Vitis vinifera
transcript Vv01s0011g01610.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01610.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G17330.1 (Glycine max), 5'ss of exon 5
CAGATACTGGGTCAACTTCTCTATGCAGCCAGATTAGTGGCAGAGAAAGAAGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttgatctcattctgtacaatttctctaggttattcata---------agtgattccatcatgcgtaa---tcatctcttgctccag-----------
 | ||| ||||||||||||| ||||| |||| | | || || |||||||||||| ||  |||||| || ||||| |||||||| | ||||||   ||||||||||      | || |  |  ||||||| ||| | |  ||   |         |||| | |||  |  |  ||   | ||||  | |||              
GAAATATTGGGTCAACTTCTGTATGCTGCCAAAATTGTAGCTGAGAAAGAAGGTATTGATGATGGATTCCGTGTCGTCATCAACAATGGTCCCAGTGCCTgtaagcccctgtttcttgtta-acaatttatctggatctttttcacttgcttatagtgctgccactacccacaaactttatcttatactctttattttgattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34362915|gb|CF404500.1|CF404500
EST:     AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCT                         GTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
genomic: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttg ... cttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
EST: gi|110389333|gb|EC954162.1|EC954162
EST:     AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCT                         GTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
genomic: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttg ... cttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
EST: gi|349818483|gb|FQ403118.1|FQ403118
EST:     AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCTGATGCCT                         GTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
genomic: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttg ... cttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
EST: gi|110384323|gb|EC948751.1|EC948751
EST:     AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCT                         GTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
genomic: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttg ... cttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
EST: gi|71867299|gb|DT016354.1|DT016354
EST:     AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCT                         GTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
genomic: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttg ... cttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
EST: gi|71867022|gb|DT016077.1|DT016077
EST:     AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCT                         GTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
genomic: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttg ... cttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
EST: gi|349818522|gb|FQ403157.1|FQ403157
EST:     AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCT                         GTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
genomic: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttg ... cttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
EST: gi|110379724|gb|EC944942.1|EC944942
EST:     AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCT                         GTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
genomic: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttg ... cttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA