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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAATTGGGCCACCTCCTGTCATTGCAAATAAAGTTCCTGCTACTCAGCCAGCCGGCAACGAGGTGTATTTGGTTTGGGATGATGAGGCAATGTCCATGgtcagttgtttctgaatgcaactccatgctgtctttttgtaatgcagctgtggttatatgttattttatattttggtatggtttacaaaatttgcag

Basic information

species Vitis vinifera
transcript Vv01s0011g01240.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01240.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G34280.1 (Glycine max), 5'ss of exon 5
TTCAATTGGGCCACCTCCTGTCATTGCAAATAAAGTTCCTGCTACTCAGCCAGCCGGCAACGAGGTGTATTTGGTTTGGGATGATGAGGCAATGTCCATGgtcagttgtttctgaatgcaactccatgctgtctttttgtaatgcagctgtggttatatgttattttatattttggta-tggtttacaaaatttgcag
|||||||||||| || || || |||||||| |||| ||||||| ||||||| |||  |||||| || || |||||||||||||||||||||||||||||||| |||||| |      | || |   |  |||    ||  | | |   ||| |||   || |   | ||||| || |  | | ||||   |       
TTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTCCTCAGCCTGCCACCAACGAAGTCTACTTGGTTTGGGATGATGAGGCAATGTCCATGgtgagttgtgttcttgagaaaatatgtagtgttccatttgactac---tgttgtttcttggttggtaatattatgatgcttggttactgtag------

upper sequence: Vv01s0011g01240.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G05390.2 (Glycine max), 5'ss of exon 5
TTCAATTGGGCCACCTCCTGTCATTGCAAATAAAGTTCCTGCTACTCAGCCAGCCGGCAACGAGGTGTATTTGGTTTGGGATGATGAGGCAATGTCCATGgtcagttgtttctgaatgcaactccatgctgtctttttgtaatgcagctgtggttatatgttattttatattttggtatggtttacaaaatttgcag
|||||||||||| || || || |||||||| |||| ||||||||||||||| |||  |||||| || || || |||||||||||||||||||||||||||||  ||||| |      | || |   |  ||| |  ||         |||  ||| | | ||  ||  || | |  |||| |          || ||
TTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTACTCAGCCTGCCACCAACGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGgtgtgttgtgttcttgagaaaatatgtagtgtttcatt------tgactgctgttgtttcttggttggtaatgt--tatgatgcttggttactgtag