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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAAGAACTCACCCAAAGAATCTGTTGGAGTCTTCTAGCTCAGCAAGATGAGACTTTAATTTGGCAGAAAACTATGGATGTTCATTGCTATACATCTCGgtgaggattgtattaataagtcacaccctaaaccaatgctaatcttttccttctctctcttttttggcaatctctcaattttttactttttatttcaatttttacttatttatttatttatttttgctttaagttcattaacaggattttacttatgcttttgtttctgttcgtaattgtag

Basic information

species Vitis vinifera
transcript Vv01s0011g00780.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g00780.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G07020.1 (Glycine max), 5'ss of exon 4
TTGAAGAACTCACCCAAAGAATCTGTTGGAGTCTTCTAGCTCAGCAAGATGAGACTTTAATTTGGCAGAAAACTATGGATGTTCATTGCTATACATCTCGgtgaggattgtattaataagtcacaccctaaaccaat--gctaatcttttccttctctctcttttttggcaatctctcaattttttactttttatttcaatttttacttatttatttattta--tttttgctttaagttcattaacaggattttacttatgcttttgtttctgttcgtaattgtag
| ||||| || |||||   | ||||||||| |||||||||||||||||||||||| || || |||||||| |||   |||||| |||||||| ||| ||||| | ||| ||  | ||||      |  |||||   |    | |  ||     | ||        || ||  |||   ||    || ||   |   ||   ||  | |  | |  |    ||  | ||||    | ||||  | |||   |                                   
TGGAAGAGCTGACCCAGCAACTCTGTTGGACTCTTCTAGCTCAGCAAGATGAGACATTCATCTGGCAGAAGACTGCTGATGTTAATTGCTATGCATATCGgtaaagatagt--tgataatattgtctataaactgtttatttgagattacaaatatcgactaccattagc--tctgctaaaggcttgctccatgggtct-cttgaagtagtctgctaccataattctttgtgacatgttcccttacactgtag---------------------------------

upper sequence: Vv01s0011g00780.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G12900.1 (Glycine max), 5'ss of exon 4
TTGAAGAACTCACCCAAAGAATCTGTTGGAGTCTTCTAGCTCAGCAAGATGAGACTTTAATTTGGCAGAAAACTATGGATGTTCATTGCTATACATCTCGgtgaggattgtattaataagtcacaccctaaaccaatgctaatcttttccttctctctcttttttggcaatctctcaattttttactttttatttcaatttttacttatttatttatttatttttgctttaagttcattaacaggattttacttatgcttttgtttctgttcgtaattgtag
| ||| | || ||||| | | ||||||||| || ||||||||||||||||||||| || || |||||||| |||   |||||| ||||||||  |||||||| | ||  ||  |  |||      |  || ||   || | || |     | ||       | ||| | | || |   | |  ||     |   || ||   | ||  |  | |  | |  |   |   |   || | | ||| |  ||  ||||  || | |                   
TGGAACAGCTGACCCAGAAACTCTGTTGGACTCCTCTAGCTCAGCAAGATGAGACATTCATCTGGCAGAAGACTGCTGATGTTAATTGCTATGAATCTCGgtaaagaaagt--tgctaatattgtctatagac---tgtttatttgagattactaa-----tgttgactacctttagctctgctaaaggcttgctccatgggt-ctcttgaagtagtctgctaccgtaattcttttagtgacatg--ttcccttacactgtag-------------------

upper sequence: Vv01s0011g00780.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G03140.1 (Glycine max), 5'ss of exon 4
TTGAAGAACTCACCCAAAGAATCTGTTGGAGTCTTCTAGCTCAGCAAGATGAGACTTTAATTTGGCAGAAAACTATGGATGTTCATTGCTATACATCTCGgtgaggat---tgtattaataagtcacaccctaaaccaatgctaatcttttccttctctctcttttttggcaatctctcaattttttactttttatttcaatttttacttatttatttatttatttttgc-tttaagttcattaacaggattttacttatgcttttgtttctgttcgtaattgtag
| ||||  || |||||   | |||| |||| ||||||||||||||||||||| ||||| || |||||||| |||   ||| || |||| ||| ||||||||| |||||   ||||||||   |        ||||  |    ||||  ||  |      || ||| |  |  ||  || |      ||     |||  | | || |   ||||  |||  ||  ||   |  |||   | || |  ||| ||| | | ||   ||||||| |     |||||| ||
TAGAAGGGCTGACCCAGCAACTCTGCTGGACTCTTCTAGCTCAGCAAGATGAAACTTTCATCTGGCAGAAGACTGCTGATATTGATTGTTATGCATCTCGgtaaggatatttgtattaacgtgg-gtgatgtaaatgataaataattattgtcaatagactgtttatgtgagatgactaa------tatcaactatcactagttctg--tattggtttgcttcattgaacacttactattataactaggttttcaatgata--tttgttttt-----taattgcag