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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCTGAAGCTGCTCTTAACCATGATTGGTTCCGCGAAGTTCCTCTTCCCAAATCTAAAGATTTCATGCCTACTTTTCCTGCTCAGCATGCCCAGGACAGgtatcttgaccctatacatgactttaaatgagagatgagtaggagtgcagtttttattttttatagcaatttctaaaataaattttgttcatttgattatcag

Basic information

species Vitis vinifera
transcript Vv01s0010g02550.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os04g41100.6 (Oryza sativa), 5'ss of exon 7
CAGCTGAAGCTGCTCTTAACCATGATTGGTTCCGCGAAGTTCCTCTTCCCAAATCTAAAGATTTCATGCCTACTTTTCCTGCTCAGCATGCCCAGGACAGgtatcttgaccctatacatgactttaaatgagagatgagtaggagtgcagtttttattttttatagcaatttctaaaataaattttgttcatttgattatcag
|||| || |||||| |  | ||||| |||||||| ||||||||||| || ||||| || ||||||||||| || || |||||||   |||     ||||||||  |   | | |    | | | ||  ||     |   |   |      | ||| |||  | |||       | ||||  |||||  | |  |  |   |||
CAGCAGATGCTGCTTTGCAGCATGAGTGGTTCCGTGAAGTTCCTCTACCTAAATCAAAGGATTTCATGCCAACATTCCCTGCTCTAAATGAATTAGACAGgtacttcttcgcaaccatttaatctacttgtagtgttgcttaaat----atctttgtttcatgtag-------tgaaatttattttcctaaaat--tccacag

upper sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G115755_T01 (Zea mays), 5'ss of exon 6
CAGCTGAAGCTGCTCTTAACCATGATTGGTTCCGCGAAGTTCCTCTTCCCAAATCTAAAGATTTCATGCCTACTTTTCCTGCTCAGCATGCCCAGGACAGgta-tcttgaccctat-acatgacttt-aaatgagagatgagtaggagtgcagtttttattt-tttatagcaatttctaaaataaattttgttcatttgattatcag
| ||||  | |||  | |||||||| |||||||| ||||||||||| |||||    || || |||||||| ||||||||||||| | |||  ||||||||||| |  | ||  ||| |  ||| ||  |||   || |||| ||  | || |  |||||||  | ||| ||  | | | | || |   |||  | |           
CTGCTGCTGATGCCTTGAACCATGAGTGGTTCCGTGAAGTTCCTCTGCCCAAGATGAAGGAATTCATGCCAACTTTTCCTGCTCTGAATGAACAGGACAGgtaatagttactgtattatttgatttccaaactcgaaatgactaa-attgaatgttttattaatatatggctgtatattacatta---ttggacctacag-------

upper sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G139038_T01 (Zea mays), 5'ss of exon 6
CAGCTGAAGCTGCTCTTAACCATGATTGGTTCCGCGAAGTTCCTCTTCCCAAATCTAAAGATTTCATGCCTACTTTTCCTGCTCAGCATGCCCAGGACAGgtatc---ttgaccctatacatg-actttaaatgagagatgagtaggagtgcagtttttattttttatagcaatttcta-aaataaattttgttcatttgattatcag
|||| || | |||||| || ||  | ||||||   ||||||||||| || ||||| ||||| |||||||| || ||||||||||   |||  |  |||||||||    || ||| | | | |  ||| |     |  | |  || |   |  | ||  ||  |   | |   ||||| | | |||| ||    | |            
CAGCAGACGATGCTCTGAAACACAAATGGTTCTCTGAAGTTCCTCTGCCTAAATCAAAAGACTTCATGCCAACATTTCCTGCTCTTAATGAACTTGACAGgtatttttttaaccatctcctttcactctggtccaatgctacgttgt--tctatttcataaatgcaaaattgatttccatatataatttgaaattacacag-------

upper sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G27820.1 (Glycine max), 5'ss of exon 8
CAGCTGAAGCTGCTCTTAACCATGATTGGTTCCGCGAAGTTCCTCTTCCCAAATCTAAAGATTTCATGCCTACTTTTCCTGCTCAGCATGCCCAGGACAGgtatcttgaccctatacatgactttaaatgagagatgagtaggagtgcagtttttat--tttttatagcaatttctaaaataaattttgttcatttgattatcag------------------------------------------------------------
| || ||||||||||| || ||||| ||||| || ||||||||||| ||||||  |||||| ||||||||||| ||||||||||| ||||| |||||||||||| ||||||  |||    |   |  | |  |  | | ||       | ||||| |  || |  |  | |  |  || |   |  ||||  |  |  || |                                                               
CTGCCGAAGCTGCTCTAAATCATGAGTGGTTTCGTGAAGTTCCTCTCCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtattttgacctaataggaaatgctgga-gcaattttattaaagaaaaactttttgtaattctcttgtctagataaaagagggaagttgtgtaaatatttgttgaccctatataacatttatttttgacaagttgtcataatttcatcaatcatcatataaatag

upper sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G10810.1 (Glycine max), 5'ss of exon 5
CAGCTGAAGCTGCTCTTAACCATGATTGGTTCCGCGAAGTTCCTCTTCCCAAATCTAAAGATTTCATGCCTACTTTTCCTGCTCAGCATGCCCAGGACAGgtatcttgaccctatacatgactttaaatgagagatgagtaggagtgcagtt--tttattttttatag-caatttctaaaataaattttgttcatttgattatcag---------------------------------------------------------------------
| || |||| |||||| || ||||| |||||||| ||||||||||| ||||||  |||||| ||||||||||| ||||||||||| ||||| |||||||||||  ||||||  ||     |   |  |  |    | |  || | |    ||  ||||| || | ||| |    |  || |   |  ||||  |    |||  | |                                                                     
CTGCCGAAGATGCTCTAAATCATGAGTGGTTCCGTGAAGTTCCTCTCCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtaatttgacctaattggaaatgctggagcaatttttataagaatttttttttgtttatgttctctagtctggataaaagagggaagttgtgtaaaatatttgctgagtctatactatataacatttatcaacttttatttttgacaagttttcataatttcatcatataaatag

upper sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G67580.2 (Arabidopsis thaliana), 5'ss of exon 5
CAGCTGAAGCTGCTCTTAACCATGATTGGTTCCGCGAAGTTCCTCTTCCCAAATCTAAAGATTTCATGCCTACTTTTCCTGCTCAGCATGCCCAGGACAGgtatcttgaccctatacatgactttaaatgagagatgagtaggagtgcagtttttattttttatagcaatttctaaaataaattttgttcatttgattatcag
| | | | |  ||||| || |||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||    |  |   ||  | |  | ||| ||    ||  |  || |  | || |  | | |||       |||||     |                      
CTGTTAATGAAGCTCTAAAGCATGATTGGTTCCGCGAAGTCCCTCTGCCAAAATCCAAAGATTTCATGCCTACTTTTCCTGCTCAACATGCCCAAGACAGgtactgaggtc---tatctaaactgaaacgatcagtggtt--gactttaattct-gtctcttactttttcttctatgcctag---------------------