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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGGGAGAAGAGTGACAAAGAGATTATGAGAGAGATACAAGCAATCATGCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCTgtaatgccatgccaccaactacacttttttccggatgttgggtggtgatttttactgatggaatctccacttgtgatggtttgtccttcag

Basic information

species Vitis vinifera
transcript Vv01s0010g02430.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02430.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G01350.1 (Glycine max), 5'ss of exon 5
TCAAGGGAGAAGAGTGACAAAGAGATTATGAGAGAGATACAAGCAATCATGCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCTgtaatg-ccatgccaccaactacacttttttccggatgttgggtggtgatttttactgatgga--atctccacttgtgatggtttgtccttcag---------------------------------------------------
|||||||| ||||||||||| ||||| ||||||||||||||||| || ||| | ||||||||||| || |||||||||||||||||| | |||||||| ||||| | |||||       | | |   |  |   |||  || |      || | | |    ||  |||||  ||  |  || |||     | |                                                    
TCAAGGGAAAAGAGTGACAAGGAGATCATGAGAGAGATACAAGCGATTATGAGGCAGATTGCTTCAAGTATCACTTATTTGCCATGCCTGGATGAACCTTgtaaggaccatgtgttttgcca-atgatcattatgatcatgagaaagagttgtcattccctgagcatctcgtctctttctgcttttcatcttatttatttaacgtttattttatctcccagctaagcatatctatcttgtgtcag

upper sequence: Vv01s0010g02430.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G37380.1 (Glycine max), 5'ss of exon 5
TCAAGGGAGAAGAGTGACAAAGAGATTATGAGAGAGATACAAGCAATCATGCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCTgtaatg-ccatgc-caccaactacacttttttccggatgttgggtggtgatttttactgatggaatctccacttgtgatggtttgt-ccttcag-------------------------------------------
|| ||||| ||||||||||| ||||| ||||||||||||||||| || ||| | ||||||||||| || |||||||||||||||||| | |||||||| |||||   ||| |  |     |||   |  |        ||||    |   ||    || ||    | || |||| | ||   || | |||| |                                            
TCGAGGGAAAAGAGTGACAAGGAGATCATGAGAGAGATACAAGCCATTATGAGGCAGATTGCTTCAAGTATCACTTATTTGCCATGCCTGGATGAACCTTgtaagaaccacgtgctttgcctatgatcatgagtaacagttgtcatgcccttgcatctcatctc-tgtctacttttcatctcttattcctttaacattcattttatctcccagctaagcatatccatcttgtttcag

upper sequence: Vv01s0010g02430.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G23270.1 (Glycine max), 5'ss of exon 4
TCAAGGGAGAAGAGTGACAAAGAGATTATGAGAGAGATACAAGCAATCATGCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATG-----AACCCTgtaatg-ccatgc----caccaacta-cacttttttccggatgttgggtggtgatttttactg-atggaatctccacttgtgatggtttgtcctt-cag
            ||||||||  |||| ||||||||||||| ||| || ||| | || |||||||| || ||||||||||| |||||| | ||||     |||| ||||| | |||||       ||||  | || | |  ||  ||  | | || || |||      | ||    ||||    ||  |   ||| |  ||  ||
------------AGTGACAAGAAGATCATGAGAGAGATACTAGCGATAATGAGGCATATTGCTTCAAGTATCACTTATTTTCCATGCCTGGATGGGACCAACCTTgtaaggaccatgtgttttgccaatgatcattatgatcatgagatagagttgtcattccctgagcatcttgtctcttgctgctacaatttctgtttatag

upper sequence: Vv01s0010g02430.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G25980.1 (Arabidopsis thaliana), 5'ss of exon 5
TCAAGGGAGAAGAGTGACAAAGAGATTATGAGAGAGATACAAGCAATCATGCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCTgtaatgccatgccaccaactacacttttttccggatgttgggtggtgatttttactgatggaatctccacttgtgatggt--ttgtccttcag-----
|| |||||||||||||| || ||||| ||||| ||||| ||||| || ||| ||||| ||||||| ||  | ||||| ||||| ||  | |||||| | |||||   |   | |   |    |  |||    |    |    | |  | |  |     | | ||   |  || |||| ||   |||  ||        
TCGAGGGAGAAGAGTGATAAGGAGATCATGAGGGAGATTCAAGCTATTATGAGACAGGTTGCTTCAAGTGTTACTTACTTGCCTTGTCTTGATGAAACATgtaagaac---caattcataggaactttgagtgatcatcatttcggaactagtttgatttggattctcgtttttgattgtgcatgttgtttgtattag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349818496|gb|FQ403131.1|FQ403131
EST:     GCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCT                         GTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
genomic: GCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCTgtaatgccat ... tgtccttcagGTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
EST: gi|349818528|gb|FQ403163.1|FQ403163
EST:     GCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCT                         GTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
genomic: GCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCTgtaatgccat ... tgtccttcagGTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
EST: gi|110420673|gb|EC986949.1|EC986949
EST:     TGCCATGCATCGATGAACCCT                         GTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
genomic: TGCCATGCATCGATGAACCCTgtaatgccat ... tgtccttcagGTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
EST: gi|349818475|gb|FQ403110.1|FQ403110
EST:     GCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCT                         GTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
genomic: GCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCTgtaatgccat ... tgtccttcagGTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
EST: gi|349818516|gb|FQ403151.1|FQ403151
EST:     GCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCT                         GTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
genomic: GCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCTgtaatgccat ... tgtccttcagGTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
EST: gi|349818494|gb|FQ403129.1|FQ403129
EST:     GCGACAGATTGCTTCCAGCATCACCTATTTGCCATGCATCGATGAACCCT                         GTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
genomic: GCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCTgtaatgccat ... tgtccttcagGTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
EST: gi|349818530|gb|FQ403165.1|FQ403165
EST:     GCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCT                         GTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
genomic: GCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCTgtaatgccat ... tgtccttcagGTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
EST: gi|349818538|gb|FQ403173.1|FQ403173
EST:     GCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCT                         GTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
genomic: GCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCTgtaatgccat ... tgtccttcagGTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
EST: gi|349818492|gb|FQ403127.1|FQ403127
EST:     GCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCT                         GTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA
genomic: GCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATGAACCCTgtaatgccat ... tgtccttcagGTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCA