Sequence
atgc intronic sequence ATGC exonic sequenceCTATGATATTTATCTTCTACCCCCTGGTGAAGATCCTGAATCTTGCCAATCATATTTAAGGATGCGGAATAAAGATGGAAAATACAGTCTCATGTTTGAGgtgagccgcttcaaatttgaatctctttgttgacagttttaaaggtcctgagatttatatgtattactgctgctcttacatgattacaatgtttgctgaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G147430_T02 (Zea mays), 5'ss of exon 6
CTATGATATTTATCTTCTACCCCCTGGTGAAGATCCTGAATCTTGCCAATCATATTTAAGGATGCGGAATAAAGATGGAAAATACAGTCTCATGTTTGAGgtg-agccgcttcaaatttgaatctctttgttgacagttttaaaggtcctgagatttatatgtattactgctgctcttacatgattacaat-gtttgctgaa
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TTATGATATATATCTGCTTCCACCTGGTGAAGACCCAGAAGCATGCCAATCTTACTTGAGAATGCGGAATAGGGAAGGGAAATATAATCTAATGTTTGAGgtatatccgttttatacttttcctatcctaccaatgaattcca--gttttatgttttttctcccttataaatggaatttcagttttatgtttgatagctaca
upper sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 6
CTATGATATTTATCTTCTACCCCCTGGTGAAGATCCTGAATCTTGCCAATCATATTTAAGGATGCGGAATAAAGATGGAAAATACAGTCTCATGTTTGAGgtgagccgcttcaaatttgaatctctttgttgaca-gttttaaaggtcctgagatttatatgtatta-ctgctgctcttacatgattacaatgtttgctgaa---
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TTATGACATATATCTTCTACCACCCGGTGAAGATCCAGAAACTTGCCAATCATATTTACGGATGCGAAATAAAGATGGGAAATACAGTCTCATGTTTGAGgtttggttccttgatat--attttatattttggtgtgacctgattgtcc---attcaataggtgatatcagatttacttataagaatgtagttgaatcaaaatat
upper sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G09660.1 (Glycine max), 5'ss of exon 6
CTATGATATTTATCTTCTACCCCCTGGTGAAGATCCTGAATCTTGCCAATCATATTTAAGGATGCGGAATAAAGATGGAAAATACAGTCTCATGTTTGAGgtgagccgcttcaaatttgaatctctttgttgac--agttttaaaggtcctgagatttatatgtattactgctgctcttacatgattacaatgtttgctgaa----
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TTATGACATATATCTTCTACCACCCGGTGAAGATCCAGAAACTTGTCAATCATATTTACGGATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGgtttg--gttccttgttatattttatattttgattgaacctgattgtccattcaatttgtg---atagcaaatttacttataagaatatagt-tgaattaaaatat
upper sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G26190.1 (Arabidopsis thaliana), 5'ss of exon 6
CTATGATATTTATCTTCTACCCCCTGGTGAAGATCCTGAATCTTGCCAATCATATTTAAGGATGCGGAATAAAGATGGAAAATACAGTCTCATGTTTGAGgt--gagccgcttcaaatttgaatctctttgttgacag---ttttaaaggtcctgagatttatatgtattactgctgctcttacatgat-tacaatgtttgctgaa----------------------------
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CTATGATATATATCTTCTTCCTCCGGGTGAAGATCCAGAGTCGTGCCAATCATATTTGAGGATGCGGAATAAAGATGGAAAGTACAGCCTTATGTTTGAGgtttgttcagagtttattttccatgttctcatcaatatgactattcaatatctggaaaagctgaca-atccctctgattctggtaagatgcttagtatctggtgaataactgtggttctggttttgacaaccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294965244|gb|GW838931.1|GW838931EST: CATATTTAAGGATGCGGAATAAAGATGGAAAATACAGTCTCATGTTTGAG GAATGGGTTACTGATAATCCATTTGTTATATCACCAAGAATAACTTTTGAA
genomic: CATATTTAAGGATGCGGAATAAAGATGGAAAATACAGTCTCATGTTTGAGgtgagccgct ... ctcatttcagGAATGGGTTACTGATAATCCATTTGTTATATCACCAAGAATAACTTTTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTATGATATTTATCTTCTACCCCCTGGTGAAGATCCTGAATCTTGCCAATCATATTTAAGGATGCGGAATAAAGATGGAAAATACAGTCTCATGTTTGAGgtgagccgcttcaaatttgaatctctttgttgacagttttaaaggtcctgagatttatatgtattactgctgctcttacatgattacaatgtttgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA