Sequence
atgc intronic sequence ATGC exonic sequenceGCTCCTACTGGGGAAGCTTGCCTGTGTCAACTTAGAGGGTCTTACCCATCAGCAGAAGCTCGCATTTTGGATAAACATATACAATTCCTGCATGATGAATgtaagagatctcactgtcatcctcatgtttaaaaatttacaatgcagaaaagaaaagacaattggctcatagtttcgagcataaataaatttatcaaaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0804g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os09g28850.2 (Oryza sativa), 5'ss of exon 5
GCTCCTACTGGGGAAGCTTGCCTGTGTCAACTTAGAGGGTCTTACCCATCAGCAGAAGCTCGCATTTTGGATAAACATATACAATTCCTGCATGATGAATgtaagagatctcactgtcatcctcatgtttaaaaatttacaatgcagaaaagaaaagacaattggctcatagtttcgagcataaataaattt-atcaaaat-
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GGCTTTGATCCGGAGGCTTTCATCGGTTGACCTGACGGGGCTCTCCCATCAGCAGAAGCTGGCATTCTGGATCAACATCTACAATTCGTGCATGATGAATgtaagctgtcagcctgtca--ctcataattgagcccacccatcctgaatttcttcatcttgatcaattatatctttgttcattttctcgttagagggaaatt
upper sequence: Vv00s0804g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G066516_T01 (Zea mays), 5'ss of exon 5
GCTCCTACTGGGGAAGCTTGCCTGTGTCAACTTAGAGGGTCTTACCCATCAGCAGAAGCTCGCATTTTGGATAAACATATACAATTCCTGCATGATGAATgtaagagatctcactgtcat-cctcatgtttaaaaatttacaatgcagaaaagaaaag----acaattggctcatagtttcgagcataaataaatttatcaaaat
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GGCCTTGCTGCGGAGGCTGTCGTCGGTTGACCTGGCGGGGCTCTCCCATCAGCAGAAGCTGGCCTTCTGGATCAACGTCTACAATTCCTGCATGATGAACgtaagccatcgggcagtcacatttcagagttgggtgtttcctcttcttgtgtgtttttttttaaaagaagaagacagcaaaattcgcaattcggtttgct-----
upper sequence: Vv00s0804g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G06130.1 (Glycine max), 5'ss of exon 5
GCTCCTACTGGGGAAGCTTGCCTGTGTCAACTTAGAGGGTCTTACCCATCAGCAGAAGCTCGCATTTTGGATAAACATATACAATTCCTGCATGATGAATgtaagagatctcactgtcatcctcatgtttaaaaatttacaatgcagaaaagaaaagacaattggctcatagtttcgagcataaata-aatttatcaaaat------------------------------------------------------
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GTTTCTACTCGGGAAACTTGCCTCTGTGAACATAAAGGATCTTACTCATCAGGAGAAACTTGCATTTTGGATAAACACTTACAATTCCTGCATGCTGAATgtaagatacctttctgtca--ctgatttgctacttctcaaaacaacgtaaggctgaagaattaggcctttgtttgaggacttgatttcaatttgatatcatcttagcttgcctaacatgttgagggtaaccacgattgtttgggtgtatatttag
upper sequence: Vv00s0804g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G20320.1 (Glycine max), 5'ss of exon 8
GCTCCTACTGGGGAAGCTTGCCTGTGTCAACTTAGAGGGTCTTACCCATCAGCAGAAGCTCGCATTTTGGATAAACATATACAATTCCTGCATGATGAATgtaagagatctcactgtcatcctcatgtttaaaaatttacaatgc-agaaaagaaaagacaattggctcatagtttcgagcataaataaatttatcaaaat------------------------------------------
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GTTCCTACTTGGGAAACTAGCCTCTCTGAACTTGAAGGGTCTTACTCATCAGGAAAAACTTGCATTCTGGATAAACACTTACAATTCCTGCATGATGAATgtaaaacacctttctgccat--tgatttactgcatctcattatgttagaacaattgttacaacacatt-acaatgcaacacttgaagggtcttaatatgctgtgagtcaacacattgaaagatttttggtttaaatgttgtag
upper sequence: Vv00s0804g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G39120.1 (Glycine max), 5'ss of exon 7
GCTCCTACTGGGGAAGCTTGCCTGTGTCAACTTAGAGGGTCTTACCCATCAGCAGAAGCTCGCATTTTGGATAAACATATACAATTCCTGCATGATGAATgtaagagatctcactgt-catcctcatgtttaaaaattta--caatgc---agaaaagaaaagacaattggc----tcatagttt--cgagcataaataaatttatcaaaat--------------------
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GTTTCTACTCGGGAAACTTGCCTCCGTGAGCATGAAGGATCTTACTCATCAAGAGAAACTTGCATTTTGGATAAACACTTATAATTCCTGCATGCTTAATgtaagatacctttctgtacaacgtaaggcggaagaattaggccattgtttgaggacttgatttgaatttgatatcatcttagcttgcctaacatgttgagggtaaccacaattatttgggtgtatattttag
upper sequence: Vv00s0804g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G37080.2 (Arabidopsis thaliana), 5'ss of exon 7
GCTCCTACTGGGGAAGCTTGCCTGTGTCAACTTAGAGGGTCTTACCCATCAGCAGAAGCTCGCATTTTGGATAAACATATACAATTCCTGCATGATGAATgtaagagatctcactgtcatcctcatgtttaaaaatttacaatgcagaaaagaaaagacaattggctcatagtttcgagcataaataaatttatcaaaat
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GTTCCTGCTTAATAAGCTTTCTGTTGTCAATCTAGACGGTCTTAGCCACCAGCAGAAGCTTGCATTCTGGATAAATACTTATAATTCCTGCGTTATGAATgt--gagacttgtgtgattacttgatatgatagagatagagaactgtctgtgaaaacgttgctgatgtcttgtttccaatttaccttcgtag--------
upper sequence: Vv00s0804g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ31980 (Selaginella moellendorffii), 5'ss of exon 2
GCTCCTACTGGGGAAGCTTGCCTGTGTCAACTTAGAGGGTCTTACCCATCAGCAGAAGCTCGCATTTTGGATAAACATATACAATTCCTGCATGATGAATgtaagagatctcactgtcatcctcatgtttaaaaatttacaat-gcagaaaagaaaagacaattggctcatagtttcgagcataaataaatttatcaaaat
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AGTTTTGATAGGCAAGCTGGCGGGGGTCGATCTACAACATATGACTCGACAGCAGAAGCTGGCATTTTGGATTAACGTATACAACGCATGCATGATGCATgtaagtttttgtccggcttcgtgtttgtcttgtttttaattctcgctttacacccgactccactcgctcacacttccgt-catgcttgtgtag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37183652|gb|CF603006.1|CF603006EST: AGCAGAAGCTCGCATTTTGGATAAACATATACAATTCCTGCATGATGAAT GCATTTCTGGAGCATGGAGTGCCTGAGAATCCTGAAATGGTTGTAGCTCTG
genomic: AGCAGAAGCTCGCATTTTGGATAAACATATACAATTCCTGCATGATGAATgtaagagatc ... agtgtttcagGCATTTCTGGAGCATGGAGTGCCTGAGAATCCTGAAATGGTTGTAGCTCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTCCTACTGGGGAAGCTTGCCTGTGTCAACTTAGAGGGTCTTACCCATCAGCAGAAGCTCGCATTTTGGATAAACATATACAATTCCTGCATGATGAATgtaagagatctcactgtcatcctcatgtttaaaaatttacaatgcagaaaagaaaagacaattggctcatagtttcgagcataaataaatttatcaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaaa