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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAACATATGGGTTATATTCACATTTGTTGCTGTATGGCATGACTTAGAGTGgtactacttgctttttcaagttttccaatgtcactttttccttgacagtgaaaaagaagtatgaattttttaaatcctattcctcatctgacagtgtattggttttgaccttag

Basic information

species Vitis vinifera
transcript Vv00s0581g00010.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0449g00010.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G042981_T01 (Zea mays), 5'ss of exon 14
GTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAACATATGGGTTATATTCACATTTGTTGCTGTATGGCATGACTTAGAGTGgtactacttgctttttcaagttttccaatgtcactttttccttgacagtgaaaaagaagtatgaattttttaaatcctattcctcatctgacagtgtattggttttgaccttag
|||| | |||||||||||||| || ||||| ||||| || ||||  || ||||| |||||||| ||||| || || ||||||||  |||| |||||     ||| |   |  || | |  |  |   |  || ||     |  | |    | |    |||  ||| ||  || |||| | | |                        
GTACTTATACATTCCTCTTGGTGGTTCTCAAAGAAAACTACTGAGTATCTGGGTGATATTCACGTTTGTAGCAGTGTGGCATGATCTAGAATGgtagcttctgcataaccctgtgt-ctgacatgtttgcttactctgtcgccacatc--atttctgattacttagat--taatcctaaacag------------------------

upper sequence: Vv00s0449g00010.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 14
GTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAACATATGGGTTATATTCACATTTGTTGCTGTATGGCATGACTTAGAGTGgtactacttgctttttcaagttttccaatgtcactttttccttgacagtgaaaaagaagtatgaattttttaaatcctattcctcatctgacagtgtattggttttgaccttag
||| || ||||||||||||||||| ||| ||| |||||| || ||  | |||||| | ||||||||||||||  | |||||||| ||||||||||| |  || | |||     || |||||  ||| | | | ||  ||  || |||||  | | || |||||||     ||||       |||     ||||  | | ||||||||
GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTGgta-tgtttcccttt----attgtccaagttcaatctattct--acc-tgtaaaagttgca-gagttttttatcagatattttatgcttgat----tattcttatggaccttag

upper sequence: Vv00s0449g00010.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 15
GTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAACATATGGGTTATATTCACATTTGTTGCTGTATGGCATGACTTAGAGTGgtactacttgctttttcaagttttccaatgtcactttttccttgacagtgaaaaagaagtatgaattttttaaatcctattcctcatctgacagtgtattggttttgaccttag
||| || ||||||||||||||||| ||| ||| |||||| || ||  | |||||| | ||||||||||||||  | |||||||| ||||||||||| |  || | |||     || |||||  ||| | | | ||   | ||  |||||  | | || |||||||     ||||       |||     | ||  | | ||||||||
GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTGgta-tgtttcccttt----attgtccaaattcaatctattct-accggt--aaaagttgca-gagttttttatcagatattttatgcttgat----tgttcttatggaccttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|156737221|gb|EV241342.1|EV241342
EST:     ACATATGGG-TATAATTCACATTTGTTGCTGTATGGCATGACTTAGAGTG                         GAAGCTTCTTTCATGGGCATGGTAAACGTG-TTATTTCTTTGTTCCAGAGA
genomic: ACATATGGGTTAT-ATTCACATTTGTTGCTGTATGGCATGACTTAGAGTGgtactacttg ... ttgaccttagGAAGCTTCTTTCATGGGCATGGTTAACGTGTTTA-TTCTTTGTTCCAGAGA