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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTTGTGGAAACAGTTGTCTCCTATGGATGTTTTCATCATTGGTTATGGGgtaagaggtgatctttaaaatattatatgtttgcattcattaaatgttagggtgttggttttattttcattagttgaactaagattgttgaataaatgag...

Basic information

species Vitis vinifera
transcript Vv00s0449g00010.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0449g00010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 11
TGGCTTGTGGAAACAGTTGTCTCCTATGGATGTTTTCATCATTGGTTATGGGgtaagaggtgatctttaaaatattatatgtttgcattcattaaatgttagggtgttggttttattttcattagttgaactaagattgttgaataaa--tgag----------------------------------------------------------------------------------------
||  |||||||| || || ||||||||||| || ||||||||||| ||||| |||||||   |  | |     || |  |   ||  || | | ||   || |  ||    |  ||  |   |||   | |  |  | || | ||||   | ||                                                                                        
TGATTTGTGGAAGCACTTATCTCCTATGGACGTGTTCATCATTGGATATGGCgtaagagaatacatatt---catcaattaagtggttttactgaaccctatgacgtcaacta-atcatg--tagccaaccacacctcgtgggataaggcttagtggttgttgttcttgtattatgaaaactaaattttcccaattatatcagcatgctgccttgtcattcttttctatttatttgtttcag

upper sequence: Vv00s0449g00010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 12
TGGCTTGTGGAAACAGTTGTCTCCTATGGATGTTTTCATCATTGGTTATGGGgtaagaggtgatcttta---aaatattatatgtttgcattcattaaatgttagggtgttggttttattttcattagttgaactaagattgttgaataaa--tgag-------------------------------------------------------------------------------------------
||  |||||||| || || ||||||||||| || ||||||||||| ||||| |||||||   |  | ||   | | || |  |   ||  || | | ||      |   |    |  ||  |   |||   | || |  |||| | ||||   | ||                                                                                           
TGATTTGTGGAAGCACTTATCTCCTATGGACGTGTTCATCATTGGATATGGCgtaagagaatacatatacatatacatcaattaagtggttttactgaacccattgacatcaacta-atcatg--tagccaacctcaccttgtgggataaggcttagtggttgttgttgtttttgtatcatgaaaactaaattttcccaattatatcagcatgctgccttgtcattcttttctatttatttgtttcag