Sequence
atgc intronic sequence ATGC exonic sequenceTGATGCTTCCTCTGCTTTGTCACGGGCAGTTTGTATTGCTACTAGGTATAGTGTTGTTCGTAGACAATTTGGTTCACAGAATGGTGGACCTGAAACACAGgtagtgtagaatgcctttttccttttttaaaggaattaagaaatccaacttgttttatatgtgagtgctggtatggggatttgtgtgaactattatagtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G41600.1 (Glycine max), 5'ss of exon 7
TGATGCTTCCTCTGCTTTGTCACGGGCAGTTTGTATTGCTACTAGGTATAGTGTTGTTCGTAGACAATTTGGTTCACAGAATGGTGGACCTGAAACACAGgtagtgtagaatgcctttt--tccttttttaaaggaattaagaaatccaacttgttttatatgtgagtgctggtatggggatttgtgtgaactattatagtt------------------------------------------------------------------
|||||| || ||||||||| || |||||||| |||||||| || ||||||| |||| | ||||| ||||| ||||| ||||| || | |||||||||||| || || | ||| | | | | ||| |||| || |||| | || | ||| | | | ||| ||| | | ||| | | | |
TGATGCATCGGTTGCTTTGTCTCGAGCAGTTTGCATTGCTACAAGATATAGTGCTGTTAGAAGACAGTTTGGATCACATAATGGAGGTCTAGAAACACAGgtaatgggaggtgtgataagatccctcctcatctggtttattaaatataa-ttgtatgatgt-tgaattccg-tatttagatctat-tgactggtcaaaataaaaaaattggttttaattagtttcattctaagtgtagcgtgcttattgtgcggtttttccatttag
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G03800.1 (Glycine max), 5'ss of exon 7
TGATGCTTCCTCTGCTTTGTCACGGGCAGTTTGTATTGCTACTAGGTATAGTGTTGTTCGTAGACAATTTGGTTCACAGAATGGTGGACCTGAAACACAGgtagtgtagaatgcctttt--tccttttttaaaggaattaagaaatccaacttgttttatatgtgagtgctggtatggggatttgtgtgaactattatagtt-----------------------------------------------------------------------
|||||| || ||||||||| || |||||||| |||||||| || ||||||| |||| | ||||| ||||| ||||| ||||| || | |||||||||||| || || | | | | | | | || |||| || |||| | || | ||| | ||| || | || | | ||| | | | |
TGATGCATCAGTTGCTTTGTCTCGAGCAGTTTGCATTGCTACAAGATATAGTGCTGTTAGAAGACAGTTTGGATCACATAATGGAGGTCTAGAAACACAGgtaatgggaggtgtgataagattcctcctcatctggtgtattaaatataa-ttgtatgatgt-tgaattctgtaattag-atctat-tgactggtcaaaataaaaaatgtggtttgaattagtttcattctaagtgtagtgtgcttattgtgcggttttgcttttccatttag
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G35690.1 (Arabidopsis thaliana), 5'ss of exon 6
TGATGCTTCCTCTGCTTTGTCACGGGCAGTTTGTATTGCTACTAGGTATAGTGTTGTTCGTAGACAATTTGGTTCACAGAATGGTGGACCTGAAACACAGgtagtgtagaatgcctttttccttttttaaaggaattaagaaatccaacttgtttta--tatgtgagtgctgg-----tatggggatttgtgtgaactattatagtt------------------------------------------
|||||||| | || || | ||||||||||| |||||||||||||| |||| |||||| || || ||||| ||||| ||||||| ||| ||||||||| | | || | | | | || || | | | ||| || || || || || | || | | | ||
AAATGCTTCCACCGCGCTGGCTCGGGCAGTTTGCATTGCTACTAGGTACAGTGCTGTTCGAAGGCAGTTTGGCTCACATGATGGTGGCATTGAGACACAGgtattcaacaaatctcactattcataactatggggcaaaaatgttttctgtaacttagttaagtaagaatccaatctctagatagaatatggtcatcagtcatgaccataaacatagagaccagttattgatgttgttataattggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71863239|gb|DT012294.1|DT012294EST: GTGTTGTTCGTAGACAATTTGGTTCGCAGAATGGTGGACCTGAAGCACAG GTGATTGATTACAAAACTCAGCAAAGTAGGCTCTTTCCTTTGCTGGCTTCT
genomic: GTGTTGTTCGTAGACAATTTGGTTCACAGAATGGTGGACCTGAAACACAGgtagtgtaga ... tggtctttagGTGATTGATTACAAAACTCAGCAAAGTAGGCTCTTTCCTTTGCTGGCTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATGCTTCCTCTGCTTTGTCACGGGCAGTTTGTATTGCTACTAGGTATAGTGTTGTTCGTAGACAATTTGGTTCACAGAATGGTGGACCTGAAACACAGgtagtgtagaatgcctttttccttttttaaaggaattaagaaatccaacttgttttatatgtgagtgctggtatggggatttgtgtgaactattatagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaa