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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCACGTCTTGTGGCTCCAACTAGCTTGTACTTGGCTGCAAAAGCAGAAGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAAgtaatcacttgttactcagcatgatgttgaactgcggttttagttctccagtcttgtggttgacattttatttaacgtaagaactgagtgcctgacactttccctttgcag

Basic information

species Vitis vinifera
transcript Vv00s0360g00050.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0360g00050.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G33140.1 (Glycine max), 5'ss of exon 5
GATCCACGTCTTGTGGCTCCAACTAGCTTGTACTTGGCTGCAAAAGCAGAAGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAAgtaatcacttgttactcagcatgatgttgaactgcggtt----ttagttctccagtcttgtggttgacattttatttaacgtaagaactgagtgcctgacactttccctttgcag--------------------------
||||||||| | || ||||||||  |||||||| ||||  ||||||||||||||||||| ||||||||| | ||||||||||||||| | | ||||||| |||| |  |  |  || |  |   |||   | |  | ||    |||  |    |   |    ||  | | ||| |||          || |     | | | || |  | |                              
GATCCACGTTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgtaagctgtgttagcttataaatttgtcttattttgcttcatgttaacttctgatcgtaaaagtgaataatttgtttctgaagttgtctcatgctattatatttcctttctatgctgaaagcacagtgattttgtatgcag

upper sequence: Vv00s0360g00050.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G46170.2 (Glycine max), 5'ss of exon 6
GATCCACGTCTTGTGGCTCCAACTAGCTTGTACTTGGCTGCAAAAGCAGAAGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAAgtaatcacttgttactcagcatgatgttgaactgcg--gttttagttctccagtcttgtggttgacattttattt--aa---cgtaagaactgagtgcctgacact-ttccctttgcag----------------------------
||||||||  | || ||||||||  |||||||| ||||  ||||||||||||||||||| ||||||||| | ||||||||||||||| | | ||||||| |||| |  ||       |   |  | || |  |||   || ||   | |  |   |    ||  | | ||| |||  ||    ||   |    | |   |  || | || |||||  |                             
GATCCACGCTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgtaagctgttagcttataattttttcttaatttgcttcgtgttgacttttgatcttaaaagtgaataatttgtttccaaatttgtctcatgctattatatttcattatttcctttctatgctgaaagcacagtgattttgaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110421670|gb|EC987970.1|EC987970
EST:     TCAGAAAATTAA                         ATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
genomic: TCAGAAAATTAAgtaatcactt ... ccctttgcagATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
EST: gi|110695053|gb|EE072630.1|EE072630
EST:     AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAA                         ATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
genomic: AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAAgtaatcactt ... ccctttgcagATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
EST: gi|110709326|gb|EE084688.1|EE084688
EST:     AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAA                         ATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
genomic: AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAAgtaatcactt ... ccctttgcagATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
EST: gi|110364321|gb|EC923868.1|EC923868
EST:     AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAA                         ATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
genomic: AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAAgtaatcactt ... ccctttgcagATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
EST: gi|161719540|gb|FC067026.1|FC067026
EST:     AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAA                         ATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
genomic: AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAAgtaatcactt ... ccctttgcagATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
EST: gi|110730965|gb|EE108649.1|EE108649
EST:     AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAA                         ATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
genomic: AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAAgtaatcactt ... ccctttgcagATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
EST: gi|77582414|gb|DV220179.1|DV220179
EST:     AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAA                         ATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
genomic: AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAAgtaatcactt ... ccctttgcagATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
EST: gi|110713415|gb|EE089326.1|EE089326
EST:     AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAA                         ATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
genomic: AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAAgtaatcactt ... ccctttgcagATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
EST: gi|32247896|gb|CD713715.1|CD713715
EST:     AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAA                         ATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
genomic: AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAAgtaatcactt ... ccctttgcagATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA
EST: gi|349814319|gb|FQ398759.1|FQ398759
EST:     AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAA                         ATCCAGATGAAAAGTATAGGTATGAGATCAAGGACGTACTTGAAATGGAAA
genomic: AGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAAgtaatcactt ... ccctttgcagATCCAGATGAAAAGTATAGGTATGAGATCAAGGACATACTTGAAATGGAAA