1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGAAGCCTGTAATGAATTGATGGCATATTCAATGATATTATCATGTTGTTGCTATACTTGCTGTATCAGAAGGAAGCTTCGCAACATGTTGAACATCACGgtaactcctctctgctgctgcattatcagattcttatatgggatatattgtgattgagacaggaacccctgaattatgatttccacctgcatgtgctcct...
species | Vitis vinifera |
transcript | Vv00s0349g00020.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCTATACTTGCTGTATCAGAAGGAAGCTTCGCAACATGTTGAACATCACG GGAGGCTTGTTTGATGATTTCCTCTCACATCTGATGTGTTGCTGCTGTGCCEST: gi|352768563|gb|FQ467519.1|FQ467519
genomic: GCTATACTTGCTGTATCAGAAGGAAGCTTCGCAACATGTTGAACATCACGgtaactcctc ... tctttgacagGGAGGCTTGTTTGATGATTTCCTCTCACATCTGATGTGTTGCTGCTGTGCC
EST: GCTATACTTGCTGTATCAGAAGGAAGCTTCGCAACATGTTGAACATCACG GGAGGCTTGTTTGATGATTTCCTCTCACATCTGATGTGTTGCTGCTGTGCCEST: gi|352769201|gb|FQ471149.1|FQ471149
genomic: GCTATACTTGCTGTATCAGAAGGAAGCTTCGCAACATGTTGAACATCACGgtaactcctc ... tctttgacagGGAGGCTTGTTTGATGATTTCCTCTCACATCTGATGTGTTGCTGCTGTGCC
EST: CCTATACTTGCTGTATCAGAAGGAAGCTTCGCAACATGTTGAACATCACG GGAGGCTTGTTTGATGATTTCCTCTCACATCTGATGTGTTGCTGCTGTGCCEST: gi|30299868|gb|CB976662.1|CB976662
genomic: -CTATACTTGCTGTATCAGAAGGAAGCTTCGCAACATGTTGAACATCACGgtaactcctc ... tctttgacagGGAGGCTTGTTTGATGATTTCCTCTCACATCTGATGTGTTGCTGCTGTGCC
EST: GCTATACTTGCTGTATCAGAAGGAAGCTTCGCAACATGTTGAACATCACG GGAGGCTTGTTTGATGATTTCCTCTCACATCTGATGTGTTGCTGCTGTGCC
genomic: GCTATACTTGCTGTATCAGAAGGAAGCTTCGCAACATGTTGAACATCACGgtaactcctc ... tctttgacagGGAGGCTTGTTTGATGATTTCCTCTCACATCTGATGTGTTGCTGCTGTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGCCTGTAATGAATTGATGGCATATTCAATGATATTATCATGTTGTTGCTATACTTGCTGTATCAGAAGGAAGCTTCGCAACATGTTGAACATCACGgtaactcctctctgctgctgcattatcagattcttatatgggatatattgtgattgagacaggaacccctgaattatgatttccacctgcatgtgctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caggaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttccacc