1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAGACTGGTTTTGATCAGAGAGGAAGCCCGGAATATGATGGGAGGTGGAATACTAGATGAAAGGAATGACCGTGGTTTGAATACCCTCCCCGAATCAGAGgtttgtattcttaatttagggtatcttgaatctaattataggacggccagatgattctcattggcctaactttgtttttagtgaaatatattaatgaaaa...
species | Vitis vinifera |
transcript | Vv00s0333g00020.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TACTAGATGAAAGGAATGACCGTGGTTTGAATACCCTCCCCGAATCAGAG GTGAACTTCTTGACCAAGCTGGTTGCCTTGAAACCTGGGGAAACTGTTCAGEST: gi|351036712|gb|FQ457425.1|FQ457425
genomic: TACTAGATGAAAGGAATGACCGTGGTTTGAATACCCTCCCCGAATCAGAGgtttgtattc ... gtcactgcagGTGAACTTCTTGACCAAGCTGGTTGCCTTGAAACCTGGGGAAACTGTTCAG
EST: TACTAGATGAAAGGAATGACCGTGGTTTGAATACCCTCCCCGAATCAGAG GTGAACTTCTTGACCAAGCTGGTTGCCTTGAAACCTGGGGAAACTGTTCAGEST: gi|51051659|gb|CO819167.1|CO819167
genomic: TACTAGATGAAAGGAATGACCGTGGTTTGAATACCCTCCCCGAATCAGAGgtttgtattc ... gtcactgcagGTGAACTTCTTGACCAAGCTGGTTGCCTTGAAACCTGGGGAAACTGTTCAG
EST: TACTAGATGAAAGGAATGACCGTGGTTTGAATACCCTCCCCGAATCAGAG GTGAACTTCTTGACCAAGCTGGTTGCCTTGAAACCTGGGGAAACTGTTCAGEST: gi|351036711|gb|FQ457424.1|FQ457424
genomic: TACTAGATGAAAGGAATGACCGTGGTTTGAATACCCTCCCCGAATCAGAGgtttgtattc ... gtcactgcagGTGAACTTCTTGACCAAGCTGGTTGCCTTGAAACCTGGGGAAACTGTTCAG
EST: TACTAGATGAAAGGAATGACCGTGGTTTGAATACCCTCCCCGAATCAGAG GTGAACTTCTTGACCAAGCTGGTTGCCTTGAAAC-TGGGGAAACTGTTCAG
genomic: TACTAGATGAAAGGAATGACCGTGGTTTGAATACCCTCCCCGAATCAGAGgtttgtattc ... gtcactgcagGTGAACTTCTTGACCAAGCTGGTTGCCTTGAAACCTGGGGAAACTGTTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGACTGGTTTTGATCAGAGAGGAAGCCCGGAATATGATGGGAGGTGGAATACTAGATGAAAGGAATGACCGTGGTTTGAATACCCTCCCCGAATCAGAGgtttgtattcttaatttagggtatcttgaatctaattataggacggccagatgattctcattggcctaactttgtttttagtgaaatatattaatgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa