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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCACGTGGCTGgttagcttcttttccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatagttttctgttttttactgcctcag

Basic information

species Vitis vinifera
transcript Vv00s0327g00020.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G11100.1 (Glycine max), 5'ss of exon 7
ATTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCACGTGGCTGgttagcttcttt--------tccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatag-ttttctgttttttactgcctcag
||| ||| ||||||||||||||||| || ||||||||||||||||||||   ||| |||||||| ||||| || || |  ||||||||| ||  ||          ||  ||| | | ||| |   ||| ||||  |  ||  || |  ||| |   |  | ||||   |  || | ||| | | |||  ||||||||| |||  ||  | ||
ATTATCCTGTCTATCACACTGCTTTCGATTCCTATAACTGGATGACAAAGTTTGGAGATCCATTCTTTCAGCGCCATGAAGCTGgttagatttcttgtttaaccctctcttagcaagaatttt--gaaatgattattttatagaccaataaa-ttgttcatccatttgtaaatcat-aagatgatatatcttttctgttctttgttgtattag

upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G39080.1 (Glycine max), 5'ss of exon 6
ATTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCACGTGGCTGgttagcttcttttccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatagttttctgttttttactgcctcag
||||||| |||||||||||||| || |||||||||||||||||| || |  |||| |||||||| || || || || || ||||||||| ||  |   ||| || ||||  ||    |     |||| |  |||||||  | |||||  ||   ||  ||||        |   |  | | |||||||| ||||  ||   |||
ATTTTCCCGTCTATCACACTGCATTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGgttagatttct---cttttaatatggtttaaaaatgtttattttttaatgaact--gtaaatccatgtgaca--gtca-------gaagatgta-aattttctgtgttttgttgtaacag

upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G36430.1 (Glycine max), 5'ss of exon 6
ATTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCACGTGGCTGgttag-cttcttttccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatagttttctgttttttactgcctcag
||||||| |||||||||||||| || |||||||||||||||||| || |  |||| |||||||| || || || || || |||||||||  |||| ||     |  |    ||  || | ||   | |||        |  |  ||    |  | ||| ||  |      ||| |   |   ||||||||| |||  ||    ||
ATTTTCCCGTCTATCACACTGCGTTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGgttagatttctcttttaattgcttaatatggtttacaagtctctatt------tttagtgaactgttaatccat-gtggcagtcataagatgtaac--ttttctgttctttgttgtaatag

upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G23220.1 (Glycine max), 5'ss of exon 7
ATTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCACGTGGCTGgttagcttcttttcct----tct---agtatgcattcttgaaaaag-atttatcgatgaactag--gaaaatcactgcttcattgtcacttcttcaagcttacatagttttctgttttttactgcctcag
|||| ||  ||||||||||||| || |||||||||||||||||| || |  || | |||||||| || || || || ||  |||||||| || || |  |    | |   ||| |  ||| || |  ||   |  ||| |||    ||    ||     | |||   |||   || ||  | ||     |||||   |  || ||         
ATTTCCCCATCTATCACACTGCGTTCGACTCCTATAACTGGATGGCATAGTATTGAGATCCATTCTTCCACCGCCATGTTACTGgttagatttttcttttatggtttaaaagtttctatttttaatgaactgtaaatccatgtgacagtcataagatgttacttttctgttctttgttgtaactgttggagtttgggggcttgtag--------

upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G54720.1 (Arabidopsis thaliana), 5'ss of exon 6
ATTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCACGTGGCTGgttagcttcttttccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatagttttctgttttttac-tgcctcag
||| ||| |||||||||||||| |||||||||||| | |||||||   || | |  |||||||||||||| ||||| || ||| || |   | |      |||  | || ||   | |  |   ||||   ||    |  |    |||  | |    ||       ||||  ||  |    || | || ||| ||  |   ||||
ATTATCCTGTCTATCACACTGCATTTGACTCCTATGATTGGATGATCCACAACGCAGATCCATTGTTTCACCGTCATGTTGCTAgtaaagatttcacttctctcttttg-atctattattatcttttagttatttgttctgtttttcatggatgttatgaagagaattcactctctc----ttctttgctttctatatttatcag

upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S184_42V6.1 (Physcomitrella patens), 5'ss of exon 9
ATTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCACGTGGCTGgttagc---ttcttttccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatagttttctgttttttactgcctcag--------------------------------------
||| ||| || || || | | | ||||||  ||| || |||||||| ||    || |||||||||||||| ||||||||||||||| ||    |||  ||| || || |  |     ||  || |   |   | |    || |    | ||   |||     |      ||   | | || |    | | |  |||         |                                       
ATTATCCTGTGTACCATAGTACCTTTGACAACTACAATTGGATGACCAAGTTCGGTGATCCATTGTTTCATCGTCACGTGGCTGgtaagagaattcccttcattttatttggtgcattt--aagatcatcggcaacacgcttgattcaacaactcttgcaaattgtactttttggttcactttaactgcggggtttatacatgaaaatgagattgggaagctggtgtggcattttcattatgcag