1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTTGTGATGCTGTTGCTGTTGCTAAGATATTAAATGCTACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagttttttgttcaagcatctacttactttttcatgaaccttattagtttttagggagacatattctgaagtggcattcttttttctgcag
species | Vitis vinifera |
transcript | Vv00s0313g00030.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|30128462|gb|CB913801.1|CB913801
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|352764443|gb|FQ472800.1|FQ472800
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|34549133|gb|CF517365.1|CF517365
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: CTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|161716901|gb|FC068123.1|FC068123
genomic: CTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|110724909|gb|EE101147.1|EE101147
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|110710320|gb|EE086550.1|EE086550
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCNAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|161714330|gb|FC062631.1|FC062631
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|33409871|gb|CF215498.1|CF215498
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|351032719|gb|FQ462433.1|FQ462433
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|30136929|gb|CB922267.1|CB922267
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|352782495|gb|FQ470398.1|FQ470398
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|352794755|gb|FQ475253.1|FQ475253
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|352785495|gb|FQ477709.1|FQ477709
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|351016529|gb|FQ423956.1|FQ423956
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|351018711|gb|FQ425613.1|FQ425613
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|351013796|gb|FQ433948.1|FQ433948
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGAEST: gi|161718121|gb|FC068890.1|FC068890
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTTGATGTTGATCACEST: gi|352773927|gb|FQ473059.1|FQ473059
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTT-GATGTTGATCAC
EST: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAG CTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
genomic: ACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagtttttt ... ttttctgcagCTCATTCATGGATATATTTGATGTTGATCACTTTATTAATGTCCTGAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTGTGATGCTGTTGCTGTTGCTAAGATATTAAATGCTACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagttttttgttcaagcatctacttactttttcatgaaccttattagtttttagggagacatattctgaagtggcattcttttttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG