Sequence
atgc intronic sequence ATGC exonic sequenceTGTGTTATCTACACTTGCGTTCACAGCATTTGAACTTCCACCTAATGGGGCTATTGGAACTAGGATTTTGGAGTTCCTTTTCCACTCAAGACCTGATTTGgtgagaaatctcttctctatttcattaattttaatagtaatgattaccttgcattatatagcactatcattcttctgtcatgattttggattggaatctt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os12g42300.1 (Oryza sativa), 5'ss of exon 4
TGTGTTATCTACACTTGCGTTCACAGCATTTGAACTTCCACCTAATGGGGCTATTGGAACTAGGATTTTGGAGTTCCTTTTCCACTCAAGACCTGATTTGgtgagaaatctcttctctatttcattaattttaatagtaatgattaccttgcattatatagcactatcattcttctgtcatgattttggattggaatctt------
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TCTTTTGTCAACCCTTGCTTTCACGGCGTTCGAGCTTCCTCCTAATGGTGCTATTGGAACCAAGATTTTGCAGTTCCTCTTTGATTCAAGACCTGATCTGgtgagatacag----tatgaattgaaaatcttaatacctct-acccctacacctagattataacttgtttcactttattttagttgagcaa-acaatcttccttgt
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G06890.1 (Glycine max), 5'ss of exon 5
TGTGTTATCTACACTTGCGTTCACAGCATTTGAACTTCCACCTAATGGGGCTATTGGAACTAGGATTTTGGAGTTCCTTTTCCACTCAAGACCTGATTTGgtgagaaatctcttctc---tatttcatt--aattttaatagtaatgattaccttgcattatatagcactatcattcttctgtcatgattttggattggaatctt
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TGTACTGTCTACTTTAGCATTTACTGCTTTTGAACTTCCTCCAAATGGAGCTGTTGGAACAAAAATTTTGGAATTCCTTTTCCACTCTAGGCCTGATCTGgtaagttttccatatctaaatattttgttcttagtttcatgtttgtaccttttcttgattataaattacagtcattctggtgagagacagacagacagaa-----
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 6
TGTGTTATCTACACTTGCGTTCACAGCATTTGAACTTCCACCTAATGGGGCTATTGGAACTAGGATTTTGGAGTTCCTTTTCCACTCAAGACCTGATTTGgtgaga----aatctcttctctatttcattaattttaatagtaatgattaccttgcattatatagcactatcattcttctgtcatgattttggattggaatctt-
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TGTATTGTCTACTTTAGCATTTACTGCTTTTGAACTTCCTCCAAATGGAGCTGTTGGAACAAAAATTTTGGAATTCCTTTTCCACTCTAGGCCTGATCTGgtaaggtttcaatatcttgacaatttttcttagtttcatgtttttactt---tttcttgatatggca--gtcattctggcgagagacagacagatagaatgcatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706912|gb|FC056800.1|FC056800EST: CTATTGGAACTAGGATTTTGGAGTTCCTTTTCCACTCAAGACCTGATTTG GTCAACATCAGAAGCGTCGATGAGGCTGTAGTGATTGGTGCTGCTCTTTCA
genomic: CTATTGGAACTAGGATTTTGGAGTTCCTTTTCCACTCAAGACCTGATTTGgtgagaaatc ... ttaattgcagGTCAACATCAGAAGCGTCGATGAGGCTGTAGTGATTGGTGCTGCTCTTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTGTTATCTACACTTGCGTTCACAGCATTTGAACTTCCACCTAATGGGGCTATTGGAACTAGGATTTTGGAGTTCCTTTTCCACTCAAGACCTGATTTGgtgagaaatctcttctctatttcattaattttaatagtaatgattaccttgcattatatagcactatcattcttctgtcatgattttggattggaatctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG