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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGACTTATAGGCATGAGCTAGGAATGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccatttctactctttaattaggagaagtttttttcctttctaagaagatcatttgatttttgtttttcctccaaatggcag

Basic information

species Vitis vinifera
transcript Vv00s0250g00020.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0250g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g01750.5 (Oryza sativa), 5'ss of exon 4
TATTGACTTATAGGCATGAGCTAGGAATGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgt-----gataccatttctactctttaatt---aggagaagtttttttcctttctaagaagatcatttgatttttgtttttcctccaaatggcag
| ||||| ||||| |||||||| |||||||| ||||| ||||| || ||||||||||| ||||| || ||| |||||||      ||| ||| | |       ||||   || || |        |  |||| |  |     | |||||       ||| |    |      
TGTTGACGTATAGACATGAGCTTGGAATGAACTACAATTTCATACGCCCAGACTTGATCGTGGGCTCCTGCTTACAGgttctcaaatatcatctatctcaaccaatttacagaaggaaaaaaaaacacttctta--actctgtctgattagctgcattcatgtgcag-----

upper sequence: Vv00s0250g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G052546_T01 (Zea mays), 5'ss of exon 5
TATTGACTTATAGGCATGAGCTAGGAATGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccatttctactctttaattaggagaagtttttttcctttctaagaagatcatttg-atttttgtttttcctccaaatggcag
  ||||| ||||| ||||| || || ||||| ||||| ||||| || |||||||||||||| || || ||| |||||||| |           ||||||   || |  | |   |  |    |      ||| || || |||  |||                  
CGTTGACATATAGACATGAACTCGGGATGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcgcatccttctttagacagaaata-tcgctccctacccctgtctgattatctgcattcatgtgcag--------------

upper sequence: Vv00s0250g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G052546_T04 (Zea mays), 5'ss of exon 3
-----------------------TATTGACTTATAGGCATGAGCTAGGAATGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccatttctactctttaattaggagaagtttttttcctttctaagaagatcatttg-atttttgtttttcctccaaatggcag
                         ||||| ||||| ||||| || || ||||| ||||| ||||| || |||||||||||||| || || ||| |||||||| |           ||||||   || |  | |   |  |    |      ||| || || |||  |||                  
CTTTTCCCCCCATGTTATTATAGCGTTGACATATAGACATGAACTCGGGATGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcgcatccttctttagacagaaata-tcgctccctacccctgtctgattatctgcattcatgtgcag--------------

upper sequence: Vv00s0250g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G33190.1 (Glycine max), 5'ss of exon 5
TATTGACTTATAGGCATGAGCTAGGAATGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccatttctactctt--taattaggagaagttttt----ttcctttctaagaagatcatttgatttttgtttttcctccaaatggcag
| |||||||||||||||||  |||||||||| || || ||||| |||||||||||||||||||| || |||||||||||  |     ||| | | |   ||  |    ||| | | |    |    || |     ||    |   |||||||||  |||| || |  |||
TTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttgattcaattatggatacctgattgaattctgtcaaatctagttttgccctgacttctatttttttgtttcccctcaaattaccag

upper sequence: Vv00s0250g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G34370.1 (Glycine max), 5'ss of exon 5
TATTGACTTATAGGCATGAGCTAGGAATGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccatttctactctttaattaggagaagtttttttcctttctaagaagatcat----ttgatttttgtttttcctccaaatggcag-
| |||||||||||||||||  |||||||||| || || ||||| |||||||||||||||||||| || |||||||||||  |     ||| | | |  |     ||     || | ||   ||||    | || |    |  |||||| | | |||  |||||  |   
TTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtattttttattcaattatggatacctgatcgaattctgtcaaatctagtttggtcctgacttctatttttttctctccctcaaattaccag

upper sequence: Vv00s0250g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G52180.1 (Arabidopsis thaliana), 5'ss of exon 4
TATTGACTTATAGGCATGAGCTAGGAATGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccatttctactctttaattaggagaagtttttttcctttctaagaagatcatttgatttttgtttttcctccaaatggcag-----------
|  | ||||| ||||| ||| |||||||||| |||||||| |||||||||||  | ||||| || || ||| |||||||  |  | ||| ||  |||   | |   || | |||| |  |   || |  |   | ||   |  |||| || ||  |                   
TTCTAACTTACAGGCACGAGTTAGGAATGAACTACAACTTTATTCGTCCAGATCTAATTGTTGGATCCTGCTTACAGgt--tcacttttatatccttctctcaaatgatgattttgttttggatatgtgg--tactttcctcgtgttcttactgtatgctctcctttattgctag

upper sequence: Vv00s0250g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ24805 (Selaginella moellendorffii), 5'ss of exon 1
TATTGACTTATAGGCATGAGCTAGGAATGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccatttctactctttaattaggagaagtttttttcctttctaagaagatcatttgatttttgtttttcctccaaatggcag
  |||||||||||||||||||| || |||||||||||     |||  ||  |  | || || || || ||| |||||||  |    ||  | || |||             || |    || | || |  | || ||  ||   |                   
--TTGACTTATAGGCATGAGCTGGGGATGAATTACAATCGTGTTCTCCCGAATCTCATCGTTGGTTCCTGCTTACAGgttctctttttctttctttttt-----------cttctcgagttgccaatagcaacaatt--ttccag-------------------

upper sequence: Vv00s0250g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ15444 (Selaginella moellendorffii), 5'ss of exon 2
TATTGACTTATAGGCATGAGCTAGGAATGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccatttctactctttaattaggagaagtttttttcctttctaagaagatcatttgatttttgtttttcctccaaatggcag
  |||||||||||||||||||| || |||||||||||     |||  ||  |  | || || || || ||| |||||||  |     |  | || |||             ||||    || | || |  | || ||  ||   |                   
ACTTGACTTATAGGCATGAGCTGGGGATGAATTACAATCGTGTTCTCCCGAATCTCATCGTTGGTTCCTGCTTACAGgttctctttatctttctttttt-----------cttttcgagttgccaatagcaacaatt--ttccag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71860017|gb|DT009072.1|DT009072
EST:     TGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAG                         AGTCCAGAAGATGTTGACAAGCTTCGGAGTATTGGGGTGAAAACCATTTTT
genomic: TGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccat ... caaatggcagAGTCCAGAAGATGTTGACAAGCTTCGGAGTATTGGGGTGAAAACCATTTTT
EST: gi|110731715|gb|EE106367.1|EE106367
EST:     TGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAG                         AGTCCAGAAGATGTTGACAAGCTTCGGAGTATTGGGGTGAAAACCATTTTT
genomic: TGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccat ... caaatggcagAGTCCAGAAGATGTTGACAAGCTTCGGAGTATTGGGGTGAAAACCATTTTT
EST: gi|110725728|gb|EE102561.1|EE102561
EST:     TGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAG                         AGTCCAGAAGATGTTGACAAGCTTCGGAGTATTGGGGTGAAAACCATTTTT
genomic: TGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccat ... caaatggcagAGTCCAGAAGATGTTGACAAGCTTCGGAGTATTGGGGTGAAAACCATTTTT
EST: gi|110390476|gb|EC955386.1|EC955386
EST:     TGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAG                         AGTCCAGAAGATGTTGACAAGCTTCGGAGTATTGGGGTGAAAACCATTTTT
genomic: TGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccat ... caaatggcagAGTCCAGAAGATGTTGACAAGCTTCGGAGTATTGGGGTGAAAACCATTTTT
EST: gi|110719002|gb|EE096483.1|EE096483
EST:     TGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAG                         AGTCCAGAAGATGTTGACAAGCTTCGGAGTATTGGGGTGAAAACCATTTTT
genomic: TGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccat ... caaatggcagAGTCCAGAAGATGTTGACAAGCTTCGGAGTATTGGGGTGAAAACCATTTTT
EST: gi|71858350|gb|DT007405.1|DT007405
EST:     TGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAG                         AGTCCAGAAGATGTTGACAAGCTTCGGAGTATTGGGGTGAAAACCATTTTT
genomic: TGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccat ... caaatggcagAGTCCAGAAGATGTTGACAAGCTTCGGAGTATTGGGGTGAAAACCATTTTT
EST: gi|110723499|gb|EE100881.1|EE100881
EST:     TGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAG                         AGTCCAGAAGATGTTGACAAGCTTCGGAGTATTGGGGTGAAAACCATTTTT
genomic: TGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccat ... caaatggcagAGTCCAGAAGATGTTGACAAGCTTCGGAGTATTGGGGTGAAAACCATTTTT