Sequence
atgc intronic sequence ATGC exonic sequenceGAGATCAATGGAAAAACCTCCATACACCATGCGTGTACCAAGGAAATCCACTCCTGAATATTATCTGGATCAAGTTCTGCCAATACTCTTGAGGAGACGTgtaaggagatgtggttcatttgtgtgatttatgcttttttattctattaaattttgtacactccttgacttgcctctttgagttttggaaaatagagata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G15170.1 (Glycine max), 5'ss of exon 5
GAGATCAATGGAAAAACCTCCATACACCATGCGTGTACCAAGGAAATCCACTCCTGAATATTATCTGGATCAAGTTCTGCCAATACTCTTGAGGAGACGTgtaaggagatgtggttcatttgtgtgatttatgctttttt--attctattaaat-tttgtacactccttgacttgcctctttgagtt-ttggaaaatagagata--------------------------------------------------------------------------------
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GCGGTCAATGGAGAAACCCCCTTATACAATGCGTGTACCGAGGAAATCAGAACCTGAATATTATCTTGATCAAGTTTTGCCGATACTCTCGAGAAGACGGgtaa-------tgcctctttt-tatgattaatacatgtttggaatttcttaactatttgactggaaaatgttttgattctgtgaatgactaccataatgaaatgttagttgttgcttaatgtcagtttagataattctcttttaactttggctgctactgactgacttttgggatattttgcag
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G04720.1 (Glycine max), 5'ss of exon 5
GAGATCAATGGAAAAACCTCCATACACCATGCGTGTACCAAGGAAATCCACTCCTGAATATTATCTGGATCAAGTTCTGCCAATACTCTTGAGGAGACGTgtaag----gagatgtggttcatttgtgtgatttatgcttttttattcta-ttaaattttgtacactcct-------tgacttgcctctttgagttttg-gaaaatagagata---------------------------------------------------------
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GCGGTCCATGGAGAAACCCCCTTATACAATGCGTGTACCAAGGAAATCAGAACCTGAATATTATCTTGATCAAGTTTTGCCGATACTCTCAAGAAGACGGgtatatcttgatacatgtttgaaatttcttaattatttcactggaaaatggtttgattctgtgaatgactaccataatgaaatgttagttgttgcttaatgtcagtttagataattctcttgtaacttcggctgcattggttactgactgacttttgggatattttgcag
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G03640.1 (Glycine max), 5'ss of exon 6
GAGATCAATGGAAAAACCTCCATACACCATGCGTGTACCAAGGAAATCCACTCCTGAATATTATCTGGATCAAGTTCTGCCAATACTCTTGAGGAGACGTgtaaggagatgtggttcatttgtgtgatttatgcttttttattctattaaattttgta---cactccttgacttgcctctttgagttttggaaaatagagata-----------------------------------------------------------------
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GCGGTCAATGGAGAAACCACCATATACAATGCGTGTCCCAAGGAAATCAGAGCCTGATTATTATCTTGATCAAGTTTTGCCTATACTTTTGAGACGACAGgtatagacacttgttatcgatacat-atttgaacttttttaattcactagatgttttgattcattaaataactctcctggtgaagcattagttgctagtttttgtcaatttacagaatgtctctgaatttggctgaggtaactaactaacatgtaggagattttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706756|gb|FC056366.1|FC056366EST: CTCCTGAATATTATCTGGATCAAGTTCTGCCAATACTCTTGAGGAGACGT GTTGTACAGTTGACAAAGTTTGATTACAGGCTTGCAAATAACATTGATGAA
genomic: CTCCTGAATATTATCTGGATCAAGTTCTGCCAATACTCTTGAGGAGACGTgtaaggagat ... aattttgcagGTTGTACAGTTGACAAAGTTTGATTACAGGCTTGCAAATAACATTGATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGATCAATGGAAAAACCTCCATACACCATGCGTGTACCAAGGAAATCCACTCCTGAATATTATCTGGATCAAGTTCTGCCAATACTCTTGAGGAGACGTgtaaggagatgtggttcatttgtgtgatttatgcttttttattctattaaattttgtacactccttgacttgcctctttgagttttggaaaatagagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaata