Sequence
atgc intronic sequence ATGC exonic sequenceTGCCACAAAGAATTTTGGAAAATTGATAACTGATAAGAAAGATATTGAAGGATTGCCTGCTACTGCTCTTGGGTTGGCTGCTCAAACAGCAGTGTCTAAGgtatttttagctgatttgtagctcaatttttttgcttgttaatccatttccttcctcaagtccagtaatattggcaattctcttctcattttttgcttatgctcatctacaatcacttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G33490.1 (Glycine max), 5'ss of exon 5
TGCCACAAAGAATTTTGGAAAATTGATAACTGATAAGAAAGATATTGAAGGATTGCCTGCTACTGCTCTTGGGTTGGCTGCTCAAACAGCAGTGTCTAAGgtatttttagctgatttgtagctcaatttttttgcttgttaatccatttccttcctcaagtccagtaatattggcaattctcttctcattttttgcttatgctcatctacaatcacttcag
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TGCAACAAAGAAGTTTGAAAAGCTAATCACTGATAAGAAGGAAATTGAAGGATTACCTGCCACTGCTCTTGGGTTGGCTGCACAGAGTGCAGTATCCAAGgtatgtcatgttgacatgttttgttatttgct-gaaggtatgacaatcagctatgttgagttttgattacttaacgggcacatgcag----------------------------------
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G02480.1 (Glycine max), 5'ss of exon 5
TGCCACAAAGAATTTTGGAAAATTGATAACTGATAAGAAAGATATTGAAGGATTGCCTGCTACTGCTCTTGGGTTGGCTGCTCAAACAGCAGTGTCTAAGgtatttttagctgatttgtagctcaatttttttgc-ttgttaatccatttccttcctcaagtccagtaatattggcaattctcttctcattttttgcttatgctcatctacaatcacttcag
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TGCAACAAAGAAGTTTGAAAAGCTAATCACTGATAAGACGGAAATTGAAGGATTACCTGCTACTGCTCTTGGGTTGGCTGCACAGAGTGCAGTATCCAAGgtgtgtcatattgacatgttttgtacttttattatattctcaaggtatg---------aaaatcagctatgttg--agttctggttacttaatgggcaaatgcag-----------------
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G65620.1 (Arabidopsis thaliana), 5'ss of exon 5
TGCCACAAAGAATTTTGGAAAATTGATAACTGATAAGAAAGATATTGAAGGATTGCCTGCTACTGCTCTTGGGTTGGCTGCTCAAACAGCAGTGTCTAAGgtatttttagctgatttgtagctcaatttttttgcttgttaatccatttccttcctcaagtccagtaatattggcaattctcttctcattttttgcttatgctcatctacaatcacttcag
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TGCAACAAAGAAATTTGAAAAGTTGATAACAGACAAGAAAGAGATCGAGGGATTGCCTCCATCTGCTCTTGGGCTATTCGCACAAGCAGCTGTCTCCAAGgtatcaata-ttaactgaaagatatataaagttccatgtttcgttatttttttagtaaggtttgttaatttttgc----ttcttgatatgtgacactag----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110723244|gb|EE100338.1|EE100338EST: GATTGCCTGCTACTGCTCTTGGGTTGGCTGCTCAAACAGCAGTGTCTAAG GGTCATAAAGATGCTACTGCTGAGAATGGGCCTTGGATAATTACATTGGAT
genomic: GATTGCCTGCTACTGCTCTTGGGTTGGCTGCTCAAACAGCAGTGTCTAAGgtatttttag ... atcacttcagGGGCATAAAGATGCTACTGCTGAGAATGGGCCTTGGATAATTACATTGGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCCACAAAGAATTTTGGAAAATTGATAACTGATAAGAAAGATATTGAAGGATTGCCTGCTACTGCTCTTGGGTTGGCTGCTCAAACAGCAGTGTCTAAGgtatttttagctgatttgtagctcaatttttttgcttgttaatccatttccttcctcaagtccagtaatattggcaattctcttctcattttttgcttatgctcatctacaatcacttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT