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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAAGTTTGCTAGGAGTTTCACGTGGGGGACCTAGTGTTGCTGAAATTGTTGATAGTATGGAGgtgctcaatttattgtttcctattgttagacatttctttgtttgcttgaggaaattgctgatgtagaattacataatgatgccaggcatcaagtgttctgatatatgtattttcattttgctgttag

Basic information

species Vitis vinifera
transcript Vv00s0199g00240.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0199g00240.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G03040.1 (Glycine max), 5'ss of exon 6
GTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAAGTTTGCTAGGAGTTTCACGTGGGGGACCTAGTGTTGCTGAAATTGTTGATAGTATGGAGgtgctcaatttattgtttcctattgttagacatttctttgtttgcttgaggaaattgctgatgtagaattacataatgatgccaggcatcaagtgttctgatatatgtattttcattttgctgttag
||| |||||||||||||| |||||||||||||| || |||||  |  |||||||||||||||| |||||| | ||   ||||||||| || | | || ||||| || ||| || |  | ||||||  | | |||  |   |||||   |  || ||  |  | |     |   || | ||        |||  |||| |||  |     || |   ||| | |    
GTCAAGGAAAGTGGTTCAGAATATTCATCTTTCAGGTGGAAGCCTATTAGGAGTTTCACGTGGAGGACCTGGAGTCAGTGAAATTGTGGACAATTTGAAGgtggtctattgat-gcattctattgacaaa-attcatgattttgcagaaaaaagtttatttttttattctgggtact-atatttactgtcatttgtt-tgacgtgcaagttatggattt-cag----

upper sequence: Vv00s0199g00240.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G04570.1 (Glycine max), 5'ss of exon 7
GTCCAGGAAAGTGGTTCAAAATATTCATCTTTC---TGGCGGAAGTTTGCTAGGAGTTTCACGTGGGGGACCTAGTGTTGCTGAAATTGTTGATAGTATGGAGgtgctcaatttattgtttcctattgttagacatttctttgtttgcttgaggaaattgctgatgtagaattacataatga-tgccaggcatcaagtgttctgatatatgtattttcattttgctgttag
    |||||||||||||| ||||||||||||||   |||  ||||  |  | |||||||||||||| |||||| | ||   ||||||||| || | | || ||||| || || |||   |||       || |  ||    | |||||  |  ||| ||  |  | |    ||  ||| ||  | | |    |   ||| | || |  | ||   |   | | | | | ||
---AAGGAAAGTGGTTCAGAATATTCATCTTTCAGGTGGAAGAAGCCTATTGGGAGTTTCACGTGGAGGACCTGGAGTCAGTGAAATTGTGGACAATTTGAAGgtggtctatatatcccttctataaaataaatgttg---tatttgc--ggagaagtttttatttt----ttttatactgggtacaatatttactgtgatttgtttgacgtgcatgt-tatggatttcag