Sequence
atgc intronic sequence ATGC exonic sequenceATTGTTATTACACTCGAAATATATGGTGTAAAAAACATTGTGGGAATTCCTTTTGGCTATCGTGGATTTTCTGAAGAAATAGCTGAAATGCCTgtaagtgggttctgttcttgcggttctgtttaaacagtttcaagatatgcatacatttaatcttttttgagaatatttaggaatattcaattaatttgtttggatatggctctgattatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G03040.1 (Glycine max), 5'ss of exon 5
ATTGTTATTACACTCGAAATATATGGTGTAAAAAACATTGTGGGAATTCCTTTTGGCTATCGTGGATTTTCTG---AAGAAATAGCTGAAATGCCTgtaagtgggttctgttcttgcggttctgtttaaacagtttcaagatatgcatacatttaatcttttttgagaatatttaggaatattc-----aattaatttgtttgg-atatggctctgattatcag
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ATTGTAATCACACTCGAAATATATGGTGTAACAAAGATTGTGGGTATTCCTTTTGGTTATCGTGGATTTTCAGACAAAGAGCTGACAGAAGTTCCAgtaatctcacgcttccctccttgctgattttggtctaaat-atcatttgatttaactaaagatatattgcaaatctattgaacttttcttcttaatgaatgcttacaatatttggatttcatttgcag
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G21720.1 (Glycine max), 5'ss of exon 6
ATTGTTATTACACTCGAAATATATGGTGTAAAAAACATTGTGGGAATTCCTTTTGGCTATCGTGGATTTTCTGA---AGAAATAGCTGAAATGCCTgtaagtgggttctgttcttgcggttctgtttaaacagtttcaagatatgcatacatttaatcttttttgagaatatttaggaatattcaattaat-ttgtttggatatggctctgattatcag
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ATTGTAATCACCCTTGAAATATATGGTGTAAAAAACATCGTGGGGATTCCTTTTGGTTATCGGGGATTTTCTGACAAAGAATTGACAGAAGTGCCGgtaatctcatttttccctccttgctgattttggtgtaacagaagattcatctaaaggtacagtctgtagcacata---agttcttcctaatgactcttaactatattgggctttcatttgcag
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G38450.1 (Glycine max), 5'ss of exon 5
ATTGTTATTACACTCGAAATATATGGTGTAAAAAACATTGTGGGAATTCCTTTTGGCTATCGTGGATTTTCTGA---AGAAATAGCTGAAATGCCTgtaagtgggttctgttcttgcggttctgtttaaacagtttcaagatatgcatacatttaatcttttttgagaatatttaggaatattcaattaat-ttgtttggatatggctctgattatcag
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ATTGTAATCACCCTTGAAATATATGGTGTAAAAAACATCGTGGGGATTCCTTTTGGTTACCGGGGATTTTCTGACGAAGAATTGACAGAAGTGCCGgtaatctcattttcccctccttgctgattttggtgtaacagatgattcatctaaaggtacaatctgtagcacataagttcttcttcctaatgactcttaaatatattgggctttcatttgcag
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G04570.1 (Glycine max), 5'ss of exon 6
ATTGTTATTACACTCGAAATATATGGTGTAAAAAACATTGTGGGAATTCCTTTTGGCTATCGTGGATTTTC---TGAAGAAATAGCTGAAATGCCTgtaagtg---ggttctgttcttgcgg--ttctgtttaaacagtttcaagatatgcatacatttaatcttttttgagaatatttaggaatattcaattaatttgtttgg-atatggctctgattatcag
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ATTGTAGTCACACTCGAAATATACGATGTAACAA---TTGTGGGTATTCCTTTTGGTTATCGTGGATTTTCAGACGAAGAGCTGACAGAGGTTCCCgtaatctcacgcttccctccttgctgatttttggtcgaaatatcatttgattta-agatctatagttgaatctgatgaacttttcttccttttaatgaatgtttacaatattgggatttcatttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71859409|gb|DT008464.1|DT008464EST: GAATTCCTTTTGGCTATCGTGGATTTTCTGAAGAAATAGCTGAAATGCCT CTGTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAAGTTTGCTA
genomic: GAATTCCTTTTGGCTATCGTGGATTTTCTGAAGAAATAGCTGAAATGCCTgtaagtgggt ... tgattatcagCTGTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAAGTTTGCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGTTATTACACTCGAAATATATGGTGTAAAAAACATTGTGGGAATTCCTTTTGGCTATCGTGGATTTTCTGAAGAAATAGCTGAAATGCCTgtaagtgggttctgttcttgcggttctgtttaaacagtttcaagatatgcatacatttaatcttttttgagaatatttaggaatattcaattaatttgtttggatatggctctgattatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA