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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTCTTTGGATGTGAAAGTATTTCTGCACTGGGGGTATCTGAGATGTTAGCACGCCATCATTTGTTCAAGCGATCTTGATGTTTGGTCATGTTGACTGgtatgtattaaccctctaaaattttagttcatttcttttaggctttcctttagaccatatatctgctatagtttcctatttaattgctgacttttgagag...

Basic information

species Vitis vinifera
transcript Vv00s0187g00240.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37190196|gb|CF609545.1|CF609545
EST:     AGCGCGCCATCATTTGTTCAAGCGATCTTGATGTTTGGTCATGTTGACTG                         GTGGAGGGGGGTGTAGCATTGTGGNTACTTGTGATGGT
genomic: AGCACGCCATCATTTGTTCAAGCGATCTTGATGTTTGGTCATGTTGACTGgtatgtatta ... tttattgcagGTGGAGGGGGGTGTTGCATTGTGGTTACTTGTGATGGT
EST: gi|351021756|gb|FQ437141.1|FQ437141
EST:     AGCACGCCATCATTTGTTCAAGCGATCTTGATGTTTGGTCATGTTGACTG                         GTGGAGGGGGGTGTTGCATTGTGGTTACTTGTGATGGTATGACACACACTG
genomic: AGCACGCCATCATTTGTTCAAGCGATCTTGATGTTTGGTCATGTTGACTGgtatgtatta ... tttattgcagGTGGAGGGGGGTGTTGCATTGTGGTTACTTGTGATGGTATGACACACACTG
EST: gi|351028427|gb|FQ427323.1|FQ427323
EST:     AGCACGCCATCATTTGTTCAAGCGATCTTGATGTTTGGTCATGTTGACTG                         GTGGAGGGGGGTGTTGCATTGTGGTTACTTGTGATGGTATGACACACACTG
genomic: AGCACGCCATCATTTGTTCAAGCGATCTTGATGTTTGGTCATGTTGACTGgtatgtatta ... tttattgcagGTGGAGGGGGGTGTTGCATTGTGGTTACTTGTGATGGTATGACACACACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCTCTTTGGATGTGAAAGTATTTCTGCACTGGGGGTATCTGAGATGTTAGCACGCCATCATTTGTTCAAGCGATCTTGATGTTTGGTCATGTTGACTGgtatgtattaaccctctaaaattttagttcatttcttttaggctttcctttagaccatatatctgctatagtttcctatttaattgctgacttttgagag

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