Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATGGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgcttaatatcaagaacaagaaagctattacttccagcctgtcaaatcttttgctttgaatttgatattaacctttagaacactgggctgaatgtcttctaatttgctgtaatcttttatcag

Basic information

species Vitis vinifera
transcript Vv00s0187g00170.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0187g00170.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G08370.1 (Glycine max), 5'ss of exon 3
-CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATGGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgcttaatatcaagaacaagaaagctattacttccagcctgtcaaatcttttgctttgaatttgatattaacctttagaacactgggctgaatgtcttctaatttgctgtaatcttttatcag
 |||||||||| || || ||||| ||||||||| | || ||| |||| |||||||| ||  | ||||| ||||||||||||||||||||||||||||| ||||| |  ||| || |  |     |   | ||  | |   |    | ||   | |  |  ||  ||  |  |||||                                                     
GCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAATGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTTggtaat--cttcatttttatggatatttacctgcttcactc--tttctctggtttaattgttgaaagattgtattaca---------------------------------------------------

upper sequence: Vv00s0187g00170.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G44410.1 (Glycine max), 5'ss of exon 6
CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATGGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgcttaatatcaagaacaagaaagctattacttccagcctgtcaaatcttttgctttgaatttgatattaacctttagaacactgggctgaatgtcttctaatttgctgtaatcttttatcag
|||||||||| || || ||||| ||||||||| | || ||| |||| || ||||| ||  | ||||| ||||||||||||||||||||||||||||| ||||| |  ||| || |  |         | || || |   ||  || |    |  |   |     |||  || | |                                                     
CCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACGGAATAGACCTTAGCACAGTAGATGTTAGCTATGTCAGCAGTCGCTCTTGgtaat--cttcatttttatggatcttcacctgtttcactcatactctggtttaatagtcaaaagattgcatttcag----------------------------------------------------

upper sequence: Vv00s0187g00170.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G12590.1 (Arabidopsis thaliana), 5'ss of exon 5
CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATGGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgcttaatatcaagaacaagaaagctattacttccag-cctgtcaaatcttttgctttgaatttgatattaacctttagaacactgggctgaatgtcttctaatttgctgtaatcttttatcag-------
|||| ||||| || ||  |||||||||||||  | || |||||||| ||||| ||||| ||||||||||| |||||||||||||| || ||||| || |||||  | || || || |   | ||| |   | |    ||| | ||| |  |   |||   | ||    | |||||  | | | ||    ||  ||   | | || |  |||  ||   | || | ||         
CCAAAATACCATTTCCACTGACTCAGAGGTTCAGATCAATGTTACAGAATGGCATTGACTTGAGCACTGTCGATGTTAGCTATGTGAGTAGTCGTTCCTGgtaagtactcaa-attacaca-aaggactttgtgttatccggtcctcttcagattttcagtatgctaatcatatttgcttctggatatttgccctttctcttttttttttttatgagtttttctttcgctcttcag

upper sequence: Vv00s0187g00170.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ16068 (Selaginella moellendorffii), 5'ss of exon 5
CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATGGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgcttaatatcaagaacaagaaagctattacttccagcctgtcaaatcttttgctttgaatttgatattaacctttagaacactgggctgaatgtcttctaatttgctgtaatcttttatcag
|||| || ||||||||  | || || || || ||    ||||| ||||||||||| || |||||| | || ||||| |||||||||||||| || ||||||||      |  || ||||   |||     | | |    | |  |||   |||    |                                                                      
CCAAAATTCCTTTCCCGCTCACGCAAAGATTCCGAGGGATGTTGCAAAATGGAATCGACTTGAGCTCGGTGGATGTGAGCTATGTCAGCAGCCGTTCATGgta---agctgctagcaaggttaag-----tttcatgctcggtgtgt---atcgacag----------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30132459|gb|CB917798.1|CB917798
EST:     GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG                         GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTG
genomic: GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgctt ... cttttatcagGTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTG
EST: gi|30136299|gb|CB921637.1|CB921637
EST:     GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG                         GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
genomic: GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgctt ... cttttatcagGTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
EST: gi|294966792|gb|GW837811.1|GW837811
EST:     GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG                         GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
genomic: GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgctt ... cttttatcagGTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
EST: gi|32250235|gb|CD716054.1|CD716054
EST:     GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG                         GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
genomic: GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgctt ... cttttatcagGTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
EST: gi|30135330|gb|CB920668.1|CB920668
EST:     GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG                         GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
genomic: GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgctt ... cttttatcagGTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
EST: gi|110407602|gb|EC973208.1|EC973208
EST:     GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG                         GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
genomic: GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgctt ... cttttatcagGTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
EST: gi|110428045|gb|EC994506.1|EC994506
EST:     GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG                         GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
genomic: GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgctt ... cttttatcagGTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
EST: gi|110417816|gb|EC983901.1|EC983901
EST:     GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG                         GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
genomic: GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgctt ... cttttatcagGTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
EST: gi|110712100|gb|EE089333.1|EE089333
EST:     GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG                         GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
genomic: GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgctt ... cttttatcagGTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
EST: gi|32457083|gb|CD798257.1|CD798257
EST:     AATTGATTTGAGCACTGTAGATGTTAGCTATGTCACAGCAGTCGCTCATG                         GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
genomic: AATTGATTTGAGCACTGTAGATGTTAGCTATGT--CAGCAGTCGCTCATGgtacttgctt ... cttttatcagGTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
EST: gi|110428615|gb|EC995092.1|EC995092
EST:     GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG                         GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
genomic: GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgctt ... cttttatcagGTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
EST: gi|352764273|gb|FQ471253.1|FQ471253
EST:     GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG                         GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
genomic: GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgctt ... cttttatcagGTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
EST: gi|110429192|gb|EC995681.1|EC995681
EST:     GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG                         GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
genomic: GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgctt ... cttttatcagGTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
EST: gi|27580483|gb|CB003178.1|CB003178
EST:     GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG                         GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
genomic: GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgctt ... cttttatcagGTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
EST: gi|110728851|gb|EE104791.1|EE104791
EST:     GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG                         GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
genomic: GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgctt ... cttttatcagGTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
EST: gi|30125541|gb|CB910880.1|CB910880
EST:     GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG                         GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG
genomic: GGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgctt ... cttttatcagGTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGG