Sequence
atgc intronic sequence ATGC exonic sequenceGAACAGGAAATGGCATGGCTAAATCTCTTTTGGATTCAGTTGGTGATCCTTGTTCACCAATTAATGCTGTTCTTGCTATTATTCGAGgttacacagagcgtccattaacatttttgcatttgaaatattgcatttctttttatctgttggtaacttgtttttattaaagaattgttctgctacatatctaacccattgacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0181g00250.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G07340.1 (Glycine max), 5'ss of exon 5
GAACAGGAAATGGCATGGCTAAATCTCTTTTGGATTCAGTTGGTGATCCTTGTTCACCAATTAATGCTGTTCTTGCTATTATTCGAGgttacacagagcgtccattaacatt-tttgcatttgaaatattgcatttctttttatctgttggtaacttgtttttattaaagaattgttctgctacatatctaacccattgacag
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GTACGGGAAATGGCATGGCAAAATCTCTTCTTGATTCAGTTGGTGATCCTTGTGAAGTAGCTAATGCCGTTCTTGCCATTATACGAGgtttca------atctatttatgtcattcaaacatgtaatgtc-catttttttt---ctgt-----gctcttatatgtttaa--actgtttt-ttaaata-ctgacag--------
upper sequence: Vv00s0181g00250.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G06300.1 (Glycine max), 5'ss of exon 5
GAACAGGAAATGGCATGGCTAAATCTCTTTTGGATTCAGTTGGTGATCCTTGTTCACCAATTAATGCTGTTCTTGCTATTATTCGAGgttacacagagc--gtccattaacatttttgcatttgaaatattgcatttctttttatctgttggtaacttgtttttatt-----aaagaattgttctgctacatatctaacccattgacag
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GTACGGGAAATGGCATGGCAAAGTCTCTTCTTGATTCAGTTGGTGATCCTTGTACAGTACCCAATGCTGTTCTTGCCATCATACGAGgtttcaaactttcaattcattgtcattc--aaacttatcacattttcacattttatggccaatattattttttttcaatgtgctgatgaaagttattaactttgtattaaatgc--tgtcag
upper sequence: Vv00s0181g00250.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G31980.1 (Glycine max), 5'ss of exon 5
GAACAGGAAATGGCATGGCTAAATCTCTTTTGGATTCAGTTGGTGATCCTTGTTCACCAATTAATGCTGTTCTTGCTATTATTCGAGgttacacagagcgtccattaacatttttgcatttgaaatattgcatttctttttatctgttggtaacttgtttttattaaagaattgttctgctacatatctaacccattgacag
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------GAAATGGCATGGCAAAATCTCTTCTTGATTCAGTTGGGGATCCTTGTGAAGTAGCTAATGCCGTTCTTGCCATTATACGAGgtttca------atctatttatgt-----cattc-aaacatgtcatgtcccttttttctgtgctgttatatgttta------aactgtt-tattaaata-ctgacaggcag----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721143|gb|FC070385.1|FC070385EST: AGTTGGTGATCCTTGTTCACCAACTAATGCTGTTCTTGCTATTATTCGAG GTCATAAGTGTTCGCTGGATGTGGCTACCATCTTGCAAGGGGAGACCAAAT
genomic: AGTTGGTGATCCTTGTTCACCAATTAATGCTGTTCTTGCTATTATTCGAGgttacacaga ... ccattgacagGTCATAAGTGTTCACTGGATGTGGCTACCATCTTGCAAGGGGAGACCAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAACAGGAAATGGCATGGCTAAATCTCTTTTGGATTCAGTTGGTGATCCTTGTTCACCAATTAATGCTGTTCTTGCTATTATTCGAGgttacacagagcgtccattaacatttttgcatttgaaatattgcatttctttttatctgttggtaacttgtttttattaaagaattgttctgctacatatctaacccattgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT