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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCTTGAAATCCATCTGTTTTGGGCTGGTAAAGGGACCTGCTGTATTCCTGTCCAAGGTTACTATGGACCATCCATTTCGGCCCTTACGGTTGTACCAGgtaatgcacttgaatgatggttcatcattttcatttaatgtaaaaacttttctgaatgatgctcctgttttcttatcatggctgacaactgggtaccgttatttggttaag

Basic information

species Vitis vinifera
transcript Vv00s0125g00140.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0125g00140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os08g10310.2 (Oryza sativa), 5'ss of exon 18
TATCTTGAAATCCATCTGTTTTGGGCTGGTAAAGGGACCTGCTGTATTCCTGTCCAAGGTTACTATGGACCATCCATTTCGGCCCTTACGGTTGTACCAGgtaatgcacttgaatgatggtt-catcattttcatttaatgtaaaaacttttctgaatgatgctcctgttttcttatcatggctgacaactgggtaccgttatttggttaag
| ||||||||||||||| || |||||||| || || || || ||||||||| | ||||||||||| |||||||  || || ||  | |   |    ||| |||| ||     ||| | | |  ||| |   | |||  ||      | |    | |||||   |||| |||                                         
TTTCTTGAAATCCATCTATTCTGGGCTGGAAAGGGCACTTGTTGTATTCCTATTCAAGGTTACTACGGACCATTGATCTCAGCATTAAGCATCACTCCAAgtaa-gcgtaataattaagttaacataaaaatgattgcatt---ggattccaataaatgaaa-tcctctttcag--------------------------------------