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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAAgtaatgtaattagaaactatttgatgcaaatcagtaactaaaatgttgatctactttcatactgatactgaatgattgctaaatttacacag

Basic information

species Vitis vinifera
transcript Vv12s0055g00590.t01
intron # 43
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00590.t01 (Vitis vinifera), 5'ss of exon 43
lower sequence: LOC_Os05g16824.3 (Oryza sativa), 5'ss of exon 17
TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAAgtaatgtaattagaaactatttgatgcaaatcagtaactaaaatgttgatctactttcatactgatactgaatgattgctaaatttacacag
| |||||| |||||||||||||||||||| ||||| ||||| ||||||||| |||||||    || |||||  | || |||||| | ||    || ||||||||       | ||  | |||  |  |   | | |||||  ||  |  |    | | ||    | |   | |   | |             
TTCATTGAGATCCATCTCTTTTGGGCTGGCAAAGGCACTTGTTGTGTACCTACTCAAGGTCACTACGGACCGACGATCTCAGCATTAAGCATCACTCCAAgtaag-----cacaatatttttagttga---ctgcaactaggattatattggcttcttatgtgtaaaaccattttcttcag-----------

upper sequence: Vv12s0055g00590.t01 (Vitis vinifera), 5'ss of exon 43
lower sequence: LOC_Os05g16930.1 (Oryza sativa), 5'ss of exon 16
------------------------------------------------------------------------TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAAgtaa-tgtaattagaa-actatttgatgcaaatcagtaactaaaatgttgatctactttcatactgatactgaatgattgctaaatttacacag
                                                                        | | |||| || ||||||||||||||||| || || ||||| ||||||||| |||||||    ||||| ||    || |||||| | ||||  || ||||||||  | ||  |  |   ||| |    |||   | ||  |  |||  | ||    |    |  | |||| |                      
ATAAGGAAGATGGCGGGTGGAAAATCTTTTACTGCAGTCAACAGAAGTTATACTGCAAGAGTGTCCAAAAATTTCCTTGAGATTCATCTCTTTTGGGCTGgtaagggaacttgttgtgtacctactcaaggttactatgggccgatgatctcagcattaagtgtcacaccaagtaagcgcaaccattatgttatcttcaacaagg-attatatggaat-ctaataagatcatttttttatacag----------------------

upper sequence: Vv12s0055g00590.t01 (Vitis vinifera), 5'ss of exon 43
lower sequence: GLYMA09G15200.1 (Glycine max), 5'ss of exon 17
TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAAgtaatg-taattagaaac------------tatttgatgcaaatcagta-actaaaatgttgatctactttcatactgatactgaatgattgctaaatttacacag
||  | || |||||||||||||||||||||||||||||||| ||| |||| | |||||| || ||||| ||    |||||||| || ||||||| |||| ||||   | |  ||| ||            |||||| | ||||    ||    ||||||||| | |   ||  | ||  |  ||  |  |   || | | |     
TATCTAGAGATCCATCTCTTTTGGGCTGGAAAAGGGACTTGTTGTATACCAGTTCAAGGTACTTATGGGCCCCTGATTTCAGCCATTAGTGCTATCCCAGgtaaaacttaaaagagacaggcttttcatatatttggtccaaacacatacgtgaaaatgttgttttttatttttcctatttttgc-tagtcattatagtaa-----

upper sequence: Vv12s0055g00590.t01 (Vitis vinifera), 5'ss of exon 43
lower sequence: GLYMA08G25600.1 (Glycine max), 5'ss of exon 17
TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAAgtaatgtaattagaaactatttgatgcaaatcagtaactaaaatgttgatctactttcatac-tgatactgaatgattgctaaatttacacag--------------------------------------------
||  |||| || ||||||||||||||||||||||| ||||| ||  ||||  ||||||| || ||||| || |  |||  |||||||  ||||| |||| |||||   || | |||  ||||| |  || | ||    | || |  | | ||    | || | | || |   || |  |||| || | || |                                             
TATCTTGAGATTCATCTCTTTTGGGCTGGAAAAGGTACTTGTTGCATACCAACTCAAGGTACTTATGGGCCCTTAATTCAAGCAATCCATGCTATCCCAGgtaatactatgaaaaaa-atttggt--aatttagatgtttaattactaacctttcattatgcataatcccttatca--gctagatattcaaaatttatatatatttttaatttgataaattgttttgtgttgtacag

upper sequence: Vv12s0055g00590.t01 (Vitis vinifera), 5'ss of exon 43
lower sequence: GLYMA08G25590.1 (Glycine max), 5'ss of exon 20
TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAAgtaatgtaattagaaactatttgatgcaaatcagtaactaaaatgttgatctactttcatac-tgatactgaatgattgctaaatttacacag--------------------------------------------
||  |||| || ||||||||||||||||||||||| ||||| ||  ||||  ||||||| || ||||| || |  |||  |||||||  |||||  ||| |||||   || | |||  | ||| |  || | ||    | || |  | | ||    | || | | || |   || |  |||| || | || |                                             
TATCTTGAGATTCATCTCTTTTGGGCTGGAAAAGGTACTTGTTGCATACCAACTCAAGGTACTTATGGGCCCTTAATTCAAGCAATCCATGCTATTCCAGgtaatactatgaaaaa--aattggt--aatttagatgtttaattactaacctttcattatgcataatcccttatca--gctagatattcaaaatttatatatttttttaatttgatacattgttttgtgttgtacag