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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggcaaaattcttactgatatgttcaaaaatcatttcttttcagaatttccttagtccaagcagcaatggtattcttgtcctgatagaaatctag...

Basic information

species Vitis vinifera
transcript Vv06s0004g01270.t01
intron # 40
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720405|gb|EE096298.1|EE096298
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110719044|gb|EE096573.1|EE096573
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110719280|gb|EE097073.1|EE097073
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110720700|gb|EE096852.1|EE096852
EST:     CCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110720848|gb|EE097127.1|EE097127
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110720658|gb|EE096775.1|EE096775
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110719534|gb|EE094756.1|EE094756
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110719236|gb|EE096981.1|EE096981
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110720627|gb|EE096716.1|EE096716
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110714649|gb|EE091794.1|EE091794
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110719285|gb|EE097086.1|EE097086
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGTGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110719070|gb|EE096623.1|EE096623
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110720759|gb|EE096960.1|EE096960
EST:     TCTATGGCATATCATGGCTGATGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCGTGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110700656|gb|EE077502.1|EE077502
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110719077|gb|EE096638.1|EE096638
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|71877602|gb|DT026657.1|DT026657
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110719312|gb|EE097145.1|EE097145
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTATTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110718917|gb|EE096294.1|EE096294
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110719169|gb|EE096834.1|EE096834
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|71879777|gb|DT028832.1|DT028832
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|30299763|gb|CB976557.1|CB976557
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110725103|gb|EE101525.1|EE101525
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110719337|gb|EE097194.1|EE097194
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110719115|gb|EE096724.1|EE096724
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110720876|gb|EE097182.1|EE097182
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110720543|gb|EE096555.1|EE096555
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110725125|gb|EE101571.1|EE101571
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110720651|gb|EE096761.1|EE096761
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCCGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCACGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110718751|gb|EE095944.1|EE095944
EST:     TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
EST: gi|110720554|gb|EE096580.1|EE096580
EST:     TCTATGGCAAATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAG                         ACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC
genomic: TCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggca ... gggtcttcagACTGTTTCTGTGGGACGGCGAAAATTCAGTGCCAATTTCCAACTCATGTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTATGGCATATCATGGCTGGTGATCTGTATAATATTGTTTGTGATGAAGgtgagtggcaaaattcttactgatatgttcaaaaatcatttcttttcagaatttccttagtccaagcagcaatggtattcttgtcctgatagaaatctag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atagaaa