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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgatgtttctccctttaccatcaactttgaaaatcaaaaatcaaatacatatccattcaagcacaaacaaattgatgtggtttggttattggcttccctgcaacag

Basic information

species Vitis vinifera
transcript Vv19s0177g00100.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22011062|gb|BQ796096.1|BQ796096
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|110407606|gb|EC973213.1|EC973213
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|26262686|gb|CA813749.1|CA813749
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGCCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|22014451|gb|BQ799485.1|BQ799485
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|32457673|gb|CD798847.1|CD798847
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|34414969|gb|CF413723.1|CF413723
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|110420277|gb|EC986543.1|EC986543
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|30131588|gb|CB916927.1|CB916927
EST:     CTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: CTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|22010321|gb|BQ795355.1|BQ795355
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|32460003|gb|CD801177.1|CD801177
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCACCCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|27586671|gb|CB009366.1|CB009366
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|110397208|gb|EC962936.1|EC962936
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|30136106|gb|CB921444.1|CB921444
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|30128891|gb|CB914230.1|CB914230
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|32459848|gb|CD801022.1|CD801022
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCACCCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|30131314|gb|CB916653.1|CB916653
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|27585753|gb|CB008448.1|CB008448
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|22013158|gb|BQ798207.1|BQ798207
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|110408072|gb|EC973693.1|EC973693
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|34320968|gb|CF373722.1|CF373722
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|110421511|gb|EC987809.1|EC987809
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|30132650|gb|CB917989.1|CB917989
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|22014508|gb|BQ799542.1|BQ799542
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|110375483|gb|EC940472.1|EC940472
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|30133642|gb|CB918981.1|CB918981
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|110402223|gb|EC959593.1|EC959593
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|46919261|gb|CN548590.1|CN548590
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|110722364|gb|EE098531.1|EE098531
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|26263392|gb|CA814455.1|CA814455
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|110706968|gb|EE082960.1|EE082960
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|30296476|gb|CB973270.1|CB973270
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGTGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|110363430|gb|EC927015.1|EC927015
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|30300979|gb|CB977773.1|CB977773
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCACCCTTTTTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|22011007|gb|BQ796041.1|BQ796041
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|22010208|gb|BQ795242.1|BQ795242
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|22008034|gb|BQ793068.1|BQ793068
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|22014261|gb|BQ799295.1|BQ799295
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|34416404|gb|CF415158.1|CF415158
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|110402090|gb|EC968723.1|EC968723
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|32249891|gb|CD715710.1|CD715710
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|27580781|gb|CB003476.1|CB003476
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|110407800|gb|EC973415.1|EC973415
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
EST: gi|30133247|gb|CB918586.1|CB918586
EST:     TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAG                         GCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT
genomic: TTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgat ... cctgcaacagGCTGGCATTGTGAAGAAGGAGGATATCAAGATTCATGGTTTCTGATTTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTGCAGgtaatgtgatgtttctccctttaccatcaactttgaaaatcaaaaatcaaatacatatccattcaagcacaaacaaattgatgtggtttggttattggcttccctgcaacag

- - - - - - - - - - - - - AAAGAA