Sequence
atgc intronic sequence ATGC exonic sequenceAAGAAAGCCATTGTTCAGCACTTGTACATGGGAAGAAACCCACCTATGTTCACAGAAATGAGGGTCATTCGTGAATCTACAGATGATGATCACTTGgtatgtttgactagccctggaatggtggaaccttactgtgttatctattgggatactattgacataagtcttcagagattcagtgattcaattaatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0138g00140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G33580.1 (Glycine max), 5'ss of exon 4
AAGAAAGCCATTGTTCAGCACTTGTACATGGGAAGAAACCCACCTATGTTCACAGAAATGAGGGTCATTCGTGAATCTACAGATGATGATCACTTGgtatgtttgactagccc----tggaatggtggaaccttactgtgttatctattgggatacta---ttgacataagtcttcagagattcagtgattcaattaatgcag
|| |||| | ||||||||| | ||||||||||||||||||||| || |||| ||| | ||||| |||| | | ||||||||||||||||||||| | | | | || | | |||| | || | | | || | || |||| | ||| ||| ||
AAAGAAGCTGTCGTTCAGCACCTATACATGGGAAGAAACCCACCTTTGATCACTGAAGTTAGGGTTCTTCGCCAGAGT---GATGATGATCACTTGgtatgtgaaaatttttcaaagcagcataccaagggaatgttttgttctgcatctgtgaatgaaattttgttcaggttgatttagatattaatgtgtgattcatgtag
upper sequence: Vv19s0138g00140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G53590.1 (Arabidopsis thaliana), 5'ss of exon 4
AAGAAAGCCATTGTTCAGCACTTGTACATGGGAAGAAACCCACCTATGTTCACAGAAATGAGGGTCATTCGTGAATCTACAGATGATGATCACTTGgtatgtttgactagccctggaatggtggaaccttactgtgttatctattgggatactattgacataagtcttcagagattcagtgattcaattaatgcag
|| ||||| | | |||||| | ||||||||||||||||||||| |||| || || || |||||| ||||| ||||||| | ||||||||||||||||| |||| || | | | | |||| | || |||| | | | | | | ||| || | | || ||||||
AAAAAAGCTGTGATACAGCACCTTTACATGGGAAGAAACCCACCTCTGTTGACTGATATTAGGGTCCTTCGTCAATCTACGGGTGATGATCACTTGgtatatttg--taacgcc----tcatagaac--------atcatactttggcctcttccctccttgatctatagtagaacttatgctggagtttatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122688621|gb|EC919577.1|EC919577EST: TGTTCACAGAAATGAGGGTCATTCGTGAATCTACAGATGATGATCACTTG GTTTTGGGGTTGGGAATGAATTTTCTCACTGCTGATGATATGAGTGCAATA
genomic: TGTTCACAGAAATGAGGGTCATTCGTGAATCTACAGATGATGATCACTTGgtatgtttga ... attaatgcagGTTTTGGGGTTGGGAATGAATTTTCTCACTGCTGATGATATGAGTGCAATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGAAAGCCATTGTTCAGCACTTGTACATGGGAAGAAACCCACCTATGTTCACAGAAATGAGGGTCATTCGTGAATCTACAGATGATGATCACTTGgtatgtttgactagccctggaatggtggaaccttactgtgttatctattgggatactattgacataagtcttcagagattcagtgattcaattaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG