Sequence
atgc intronic sequence ATGC exonic sequenceAAGAGAGAATTATTTCAAGATTTGGCTCCATTATTGTGGAATTCTTTTGGTACTATTGCTGCACTATTGCAGgtatgctctatacagttcatgacagtacttgattcagtttcctttttgcttgctatatcatttaatgtgctagcttcctttattgtgcttttactgtcat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G10400.1 (Glycine max), 5'ss of exon 2
AAGAGAGAATTATTTCAAGATTTGGCTCCATTATTGTGGAATTCTTTTGGTACTATTGCTGCACTATTGCAGgtatgctctatacagttcatgaca--gtacttgattcagtt--tcctttttgcttgctatatcatttaatgtgctagcttcctttattgtgcttttactgtcat
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AAGAGGGAGCTATTTCAAGATCTTGCTCCGTTGCTATGGAATTCTTTTGGTACTATTGCTGCACTTTTGCAGgtatgccatctgacttgagttacatactccttgcctgtattgtttaccatactttgctttaatccttcttgtga-atttttacttagcaagtttgtaaaat---
upper sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G43220.1 (Glycine max), 5'ss of exon 2
AAGAGAGAATTATTTCAAGATTTGGCTCCATTATTGTGGAATTCTTTTGGTACTATTGCTGCACTATTGCAGgtatgctctatacagttcatgacagtacttgattcagtttcctttttgcttgctatatcatttaatgtgctagcttcctttattgtgcttttactgtcat------
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AAGAGGGAGCTATTTCAAGATCTTGCTCCATTGCTATGGAATTCTTTTGGTACAATTGCTGCACTTTTGCAGgtatgtt--atctggcttg----agttacatattccttgcctgtattgtttaccatactttgctttaatctttcttgttaatttttacttggtttgtaaaattttg
upper sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G02480.1 (Glycine max), 5'ss of exon 2
AAGAGAGAATTATTTCAAGATTTGGCTCCATTATTGTGGAATTCTTTTGGTACTATTGCTGCACTATTGCAGgtatgctc-tatacagttcatgacagtacttgattcagtttcctttttgcttgctatatcatttaatgtgctagcttcctttattgtgcttttactgtcat
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AAGAGAGAGTTATTTCAGGATCTTGCTCCATTATTGTGGAATTCTTTTGGTACCATGTCAGCACTTTTACAGgtatttttacatattccttttttcactcttggctttcttttgctttgtttattctttcttgtcttttatatttttttttatgaatgaatatcc-ccataat
upper sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G46250.1 (Glycine max), 5'ss of exon 2
AAGAGAGAATTATTTCAAGATTTGGCTCCATTATTGTGGAATTCTTTTGGTACTATTGCTGCACTATTGCAGgtatgctctatacagttca-tgacagta-cttgattcagtttcctttttgcttgctatatcatttaatgtgcta-gcttcctttattgtgcttttactgtcat
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AAGAGGGAGTTATTTCAGGATCTTGCTCCGTTATTGTGGAATTCTCTTGGCACCATGGCAGCACTTTTACAGgtatgcatgctttggttgacttgcattaacattacacatattctttctcacttgcctttctttcttgtcttttatatttatctgaatatccccatactga---
upper sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G20800.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGAGAGAATTATTTCAAGATTTGGCTCCATTATTGTGGAATTCTTTTGGTACTATTGCTGCACTATTGCAGgta----------tgc-tctatacagttcatgac--agtacttgattcagtttccttt-ttgcttgctatat---catttaatgtgctagcttcctttatt-----gtgcttttactgtcat-------------------------------------------------
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AAAAGAGAATTGTTTCAGGATCTGGCGCCTTTGTTGTGGAACTCTTTTGGTACCATTGCTGCCTTGTTACAGgtaatgacttaaatgcatctgtttcggttatctccagttacttaaatgcttttcctttcttgttaaattgatgagcgttgaatgcaaatgattcttttatatctaaatgctatttattcggtgttagtagcgtggttttgatttgactgtttcgtctatttgtgcttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161707254|gb|FC056419.1|FC056419EST: GGCTCCTTTCGTGTGGAATTCTTTTGGTACTATTGCTGCACTCA-TACAG GAGATAGTTTCAATTTATCCTGTTCTATCACCACCAAATCTAACTCCAGC
genomic: GGCTCCATTATTGTGGAATTCTTTTGGTACTATTGCTGCACT-ATTGCAGgtatgctcta ... ttatgtgcagGAGATAGTTTCAATTTATCCTGTTCTATCACCACCAAATCTAACTCCAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGAGAGAATTATTTCAAGATTTGGCTCCATTATTGTGGAATTCTTTTGGTACTATTGCTGCACTATTGCAGgtatgctctatacagttcatgacagtacttgattcagtttcctttttgcttgctatatcatttaatgtgctagcttcctttattgtgcttttactgtcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC