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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGGATGGAATGCTTTACACACAGTGAAAGACTCTGAAATTTTGGATGATATTGGAAAGCGTCATGTCTATTTTGTTCATTCTTACCGTGCCATGCCAgtatgttttcccttgcttgttgctcttccatatttcaactaactatttctttgacttgcatgaagttccctgatctaagttcctctatttttcctgtag

Basic information

species Vitis vinifera
transcript Vv19s0090g00810.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G10460.1 (Glycine max), 5'ss of exon 5
-TATTGGATGGAATGCTTTACACACAGTGAAAGACTCTGAAATTTTGGATGATATTGGAAAGCGTCATGTCTATTTTGTTCATTCTTACCGTGCCATGCCAgtatgttttcccttgcttgttg---ctcttccatatttcaacta----actatttctttg-acttgcatgaagttccctga----tctaagttcctctatttttcctgtag
 |||||| |||||||||||||| |      | ||||| | ||||||||||||| ||||||| |  |||||||||||||| || ||||| ||||||||||| |||||||| | |||   | |     ||  |   |   |   ||     | | || || |  |  | ||||||  |   | |    ||| | ||  |  |||||  |     
ATATTGGCTGGAATGCTTTACAAATCACCGAGGACTCGGGAATTTTGGATGATGTTGGAAATCACCATGTCTATTTTGTGCACTCTTATCGTGCCATGCCtgtatgtttccacttttctttgaaatcttcttgttgccttggctgtcacattcttactctatatattcatgaaagtgtttaagtaatctgacttttttcattttctca----

upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G12920.1 (Glycine max), 5'ss of exon 5
TATTGGATGGAATGCTTTACACACAGTGAAAGACTCTGAAATTTTGGATGATATTGGAAAGCGTCATGTCTATTTTGTTCATTCTTACCGTGCCATGCCAgtatgttttcccttgcttgttg---ctcttccatatttcaactaactatttctttgact-----tgcatgaagttccc----tgatctaagttcctctatttttcctgtag
|||||| |||||||||||||| |      | ||||| | ||||||||||||| ||||||| |  |||||||||||||| || ||||| ||||||||||| |||||||| | |||   | |     ||| |   |   |   ||  |   |||||   ||     | ||||||  |       | |||| | ||  |  |||||  | |   
TATTGGCTGGAATGCTTTACAAATCACTGAGGACTCGGGAATTTTGGATGATGTTGGAAATCACCATGTCTATTTTGTGCACTCTTATCGTGCCATGCCTgtatgtttccacttttctttgaaatctccttgttgccttggctgtcacgttcttactctatatattcatgaaagtgtttaagtaatctgacttttttcattttctcag---

upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G26900.1 (Arabidopsis thaliana), 5'ss of exon 5
TATTGGATGGAATGCTTTACACACAGTGAAAGACTCTGAAATTTTGGATGATATTGGAAAGCGTCATGTCTATTTTGTTCATTCTTACCGTGCCATGCCAgtatg-----------ttttcccttgcttgttgct-cttccatatttcaactaactatttctttgacttgcatgaagttccctgatctaagttcctctatttttcctgtag
 ||||| ||||||||||| ||    | ||| || |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| | ||||| ||||||||           | |   ||| |||  ||    || | ||| || || |  |  |  | |    | |||| | |    | ||   |||| |   |||| |   |   
CATTGGCTGGAATGCTTTGCAAGTTGGGAAGGATTCTGAAATTTTGGATGATGTTGGAAACCGTCATGTCTATTTTGTTCATTCGTACAGGGCCATTCCAgtatggatctaaataatctcttctttctttctgtcattttcgtatctctaccatattgtattctcttctacatgca-tgtgataattatagtttcataatttctatag---