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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAGTGGGAGAAGAAAATATTTAATGGTTATTGGCATCAATACTGCTTTTAGTAGTAGAAAGCGGAGAGATTCAGTTCGCGCTACTTGGATGCCACAAGgttctgaattgatcctatactctttccactattttttttttttttccctgtttgtgaaactaatttatgacaatctttttctttatgaaaattag

Basic information

species Vitis vinifera
transcript Vv19s0090g00560.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g00560.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G26940.1 (Arabidopsis thaliana), 5'ss of exon 4
TCGAGTGGGAGAAGAAAATATTTAATGGTTATTGGCATCAATACTGCTTTTAGTAGTAGAAAGCGGAGAGATTCAGTTCGCGCTACTTGGATGCCACAAGgt-tctgaattgatcctatactctttccactattttttttttttttccctgtttgtgaaactaatttatgacaatctttttctttatgaaaattag
 |       | |||||| ||| | |||||| ||||  | |||||||| ||||| || |||||||| || |||||||| || |||||||||||||| |  ||| | |  ||  |  |     | |   |  ||  | | || | |    ||     ||   ||  ||||                            
ACTGTCACTAAAAGAAAGTATCTGATGGTTGTTGGTGTTAATACTGCGTTTAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCGgtatgttgatctaagcagcggtttcagccttaagtatattgtctgggactaaacatgtgtcttctttag---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724992|gb|EE101306.1|EE101306
EST:     TAGTAGTAGAAAGCGGAGAGATTCAGTTCGCGCTACTTGGATGCCACAAG                         GTGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTG
genomic: TAGTAGTAGAAAGCGGAGAGATTCAGTTCGCGCTACTTGGATGCCACAAGgttctgaatt ... tgaaaattagGTGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTG
EST: gi|110688432|gb|EE066976.1|EE066976
EST:     TAGTAGTAGAAAGCGGAGAGATTCAGTTCGCGCTACTTGGATGCCACAAG                         GTGATAAAAGAAAGAAGCTTGANGAAGAGAAAGGCATCATAGTTCGCTTTG
genomic: TAGTAGTAGAAAGCGGAGAGATTCAGTTCGCGCTACTTGGATGCCACAAGgttctgaatt ... tgaaaattagGTGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTG
EST: gi|71875910|gb|DT024965.1|DT024965
EST:     GATTCAGTTCGCGCTACTTGGATGCCACAAG                         GTGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTG
genomic: GATTCAGTTCGCGCTACTTGGATGCCACAAGgttctgaatt ... tgaaaattagGTGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTG
EST: gi|77583730|gb|DV220900.1|DV220900
EST:     GATTCAGTTCGCGCTACTTGGATGCCACAAG                         GTGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTG
genomic: GATTCAGTTCGCGCTACTTGGATGCCACAAGgttctgaatt ... tgaaaattagGTGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTG
EST: gi|71875911|gb|DT024966.1|DT024966
EST:     GATTCAGTTCGCGCTACTTGGATGCCACAAG                         GTGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTG
genomic: GATTCAGTTCGCGCTACTTGGATGCCACAAGgttctgaatt ... tgaaaattagGTGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTG
EST: gi|37184436|gb|CF603790.1|CF603790
EST:     TAGTAGTAGAAAGCGGAGAGATTCAGTTCGCGCTACTTGGATGCCACAAG                         GTGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGCATCATAGT
genomic: TAGTAGTAGAAAGCGGAGAGATTCAGTTCGCGCTACTTGGATGCCACAAGgttctgaatt ... tgaaaattagGTGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGCATCATAGT
EST: gi|110712361|gb|EE089898.1|EE089898
EST:     GGAGAGATTCAGTTCGCGCTACTTGGATGCCACAAG                         GTGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTG
genomic: GGAGAGATTCAGTTCGCGCTACTTGGATGCCACAAGgttctgaatt ... tgaaaattagGTGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTG