Sequence
atgc intronic sequence ATGC exonic sequenceTACATCAGAACCTGAAGTTGGTGGTGTTCCCAACCGCTTTCTAGGAATAACACCTGCTTATTTATGGCAAACTCAGCTCCAACAAACACCCTTATCAATGgtatgatattccatatagtgataaaatatgaaatgcttataataaggttcttgttttctgaaattattatccgtatcgacctgcatgagggttactgaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G42870.1 (Glycine max), 5'ss of exon 4
TACATCAGAACCTGAAGTTGGTGGTGTTCCCAACCGCTTTCTAGGAATAACACCTGCTTATTTATGGCAAACTCAGCTCCAACAAACACCCTTATCAATGgtatgatattc-----catatagtgataaaatatgaa--atgcttataataaggttcttgttttctgaaattattatccgtatcgacctgcatgagggttactgaat------------
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TCCAGTGGAAGTCGGAGTTGGTGGTGTTGCCAATCGTTTTTTGGGAATTACACCTTCTTATTTGTGGCAAACTCAGCATCAAAAAGCACCATTATCCGTGgtatactatgtaacaacatatgaaagtcagcttctaagcatgctttttctgtgatggattttttgttatgtgattaactgttatgtttttcattattgatacaataacaatatctttag
upper sequence: Vv19s0090g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G11000.1 (Glycine max), 5'ss of exon 4
TACATCAGAACCTGAAGTTGGTGGTGTTCCCAACCGCTTTCTAGGAATAACACCTGCTTATTTATGGCAAACTCAGCTCCAACAAACACCCTTATCAATGgtatgatattccatatagtgataaaatatgaaatgcttataataaggttcttgttttctgaaattattatc-cgt-atcgacctgcatgagggttactgaat----------------------
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TCCAGTGGAACTCGGAGTTGGTGGTGTTCCCAATCGTTTTTTGGGAATTACTCCTTCTTATTTGTGGCAAACTCAGCATCAAAAAGCACCATTATCCGTGgtatactat---gtgtaacaacatatgaaagtcggcttctaagaatgctttttctgtggtggatttttgttatgtgattaactgttatgttttttaattattgacacattaacaatatctttag
upper sequence: Vv19s0090g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G50710.1 (Arabidopsis thaliana), 5'ss of exon 4
TACATCAGAACCTGA---AGTTGGTGGTGTTCCCAACCGCTTTCTAGGAATAACACCTGCTTATTTATGGCAAACTCAGCTCCAACAAACACCCTTATCAATGgtatgatattccatatagtgataaaatatgaaatgcttataataaggttctt-----gttttctga-----aattattatccgtatcgacctgcatgagggttactgaat--------------------------------------------------
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TGCTGTTGATACTGACGTAGTAGGTGGTGTTCCGAATCGATTTCTTGGAATAACACCTGCTTACTTATCCTATGTTCAGCTTCAAAATACTATTTCCATGgtaatgtgagat--catactgtgcctacttttggtgtcttcataactatgttgttccttcatctgctgattgcgaaatatt-tttgcaccaattcttatgaaag--attgggttatggatatctttgagtatctaattttttcttttaaataactttgcttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161712858|gb|FC062033.1|FC062033EST: CACCTGCTTATTTATGGCAAACTCAGCTCCAACAAACACCCTTATCAATG GATATGACAGAGTACCAGATGTCA
genomic: CACCTGCTTATTTATGGCAAACTCAGCTCCAACAAACACCCTTATCAATGgtatgatatt ... gcaattgtagGATATGACAGACTACCAGATGTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACATCAGAACCTGAAGTTGGTGGTGTTCCCAACCGCTTTCTAGGAATAACACCTGCTTATTTATGGCAAACTCAGCTCCAACAAACACCCTTATCAATGgtatgatattccatatagtgataaaatatgaaatgcttataataaggttcttgttttctgaaattattatccgtatcgacctgcatgagggttactgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaaa