Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatcatcaacacccaccatagagattatttattgtaagaaatttgacccatatcctgatgatgctattgtgatttttacag

Basic information

species Vitis vinifera
transcript Vv19s0090g00420.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g00420.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S23_225V6.1 (Physcomitrella patens), 5'ss of exon 2
----------------------------------------------GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatcatcaacacccaccatagag---attatttattgtaagaaatttgacccatatcctgatgatgctattgtgatttttacag-----------
                                              || ||||| ||||| ||||| ||||| ||||| || ||||| ||||||||||||||| || |||   |   |  || |  |     | |    ||| |  |     |     |||     ||     | | ||     |||             
GTTTTGCTGCAACGGAGTGGTGGTGCAGGACCCAGAGTTGGGTCAGGTCATTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtcacttatgactgccttgcaatgcgtcacggtttgaagcatgcacgtttggtatttaactgtaaagaatatgtcacctacctgatgtgctcca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110399610|gb|EC966124.1|EC966124
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|32460261|gb|CD801435.1|CD801435
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110381416|gb|EC934391.1|EC934391
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110413107|gb|EC978880.1|EC978880
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110394027|gb|EC958394.1|EC958394
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110399308|gb|EC965807.1|EC965807
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|34548008|gb|CF516240.1|CF516240
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110365571|gb|EC928781.1|EC928781
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110732012|gb|EE106936.1|EE106936
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|26262514|gb|CA813577.1|CA813577
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACACGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|32268526|gb|CD717685.1|CD717685
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110390266|gb|EC955168.1|EC955168
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|30125889|gb|CB911228.1|CB911228
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110406320|gb|EC971889.1|EC971889
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|30134865|gb|CB920203.1|CB920203
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|32270786|gb|CD719945.1|CD719945
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110714445|gb|EE091358.1|EE091358
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|33408556|gb|CF214183.1|CF214183
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110394877|gb|EC960261.1|EC960261
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|34549846|gb|CF518078.1|CF518078
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|29783601|gb|CB349899.2|CB349899
EST:     TTCAACTGCAAAGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|352782608|gb|FQ476688.1|FQ476688
EST:     TTCAACTGCAAGGTGATCAGTGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110714735|gb|EE091984.1|EE091984
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110376519|gb|EC941583.1|EC941583
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|26262469|gb|CA813532.1|CA813532
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACACGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|351016410|gb|FQ423837.1|FQ423837
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110409750|gb|EC975420.1|EC975420
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110400162|gb|EC966709.1|EC966709
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110383355|gb|EC947723.1|EC947723
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|33408126|gb|CF213753.1|CF213753
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|32247477|gb|CD713296.1|CD713296
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|30326158|gb|CD009420.1|CD009420
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|34546868|gb|CF515100.1|CF515100
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110408810|gb|EC974453.1|EC974453
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110391267|gb|EC956231.1|EC956231
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110404591|gb|EC969891.1|EC969891
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|34546689|gb|CF514921.1|CF514921
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|26263468|gb|CA814531.1|CA814531
EST:     TCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTC-TCCAG                         GCTGGGCTTGTAAAGAAGGAGCAGATCAAGATACACGGTTTTTGAGGAAT
genomic: TCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCT-CGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAAT
EST: gi|110362224|gb|EC925742.1|EC925742
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110703159|gb|EE079771.1|EE079771
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|28971176|gb|CB350209.1|CB350209
EST:     TTCAACTGCAAAGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110411871|gb|EC977598.1|EC977598
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|30322834|gb|CD006096.1|CD006096
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|30251574|gb|CB969307.1|CB969307
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110412502|gb|EC978252.1|EC978252
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110399261|gb|EC965758.1|EC965758
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110373469|gb|EC937711.1|EC937711
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110418116|gb|EC984235.1|EC984235
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|34416092|gb|CF414846.1|CF414846
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110427741|gb|EC994191.1|EC994191
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|110398077|gb|EC964179.1|EC964179
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
EST: gi|34320204|gb|CF372958.1|CF372958
EST:     TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTCCAG                         GCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT
genomic: TTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatca ... atttttacagGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGAGGAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatcatcaacacccaccatagagattatttattgtaagaaatttgacccatatcctgatgatgctattgtgatttttacag

- - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - -  AAGAAC