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CTTGGAGCAAACTTACTACTGCTGAAAGGAGTAAACTTATGAGGAAATGgtacgaggaaattgatatcctgtgatctttattaactatatatttgcttttataatgttttgaatgatccattgatccgagcttgtttgaggaagctttt...
species | Vitis vinifera |
transcript | Vv19s0085g00860.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTGGAGCAAACTTACTACTACCGAAAGGAGCAAACTTATGAGGAAATG GTACGATTTACTAATTGCCCATCAAACCGAGCTTGGTCAACTTATAACACTEST: gi|71860172|gb|DT009227.1|DT009227
genomic: CTTGGAGCAAACTTACTACTGCTGAAAGGAGTAAACTTATGAGGAAATGgtacgaggaa ... gcaattgaagGTACGATTTACTAATTGCCCATCAAACCGAGCTTGGTCAACTTATAACACT
EST: CTTGGAGCAAACTTACTACTACCGAAAGGAGCAAACTTATGAGGAAATG GTACGATTTACTAATTGCCCATCAAACCGAGCTTGGTCAACTTATAACACTEST: gi|161705553|gb|FC054834.1|FC054834
genomic: CTTGGAGCAAACTTACTACTGCTGAAAGGAGTAAACTTATGAGGAAATGgtacgaggaa ... gcaattgaagGTACGATTTACTAATTGCCCATCAAACCGAGCTTGGTCAACTTATAACACT
EST: CTTGGAGCAAACTTACTACTACTGAAAGGAGCAAACTTATGAGGAAATG GTACGATTTACTAATTGCCCATCAAACCGAGCTTGGTCAACTTATAACACTEST: gi|71862210|gb|DT011265.1|DT011265
genomic: CTTGGAGCAAACTTACTACTGCTGAAAGGAGTAAACTTATGAGGAAATGgtacgaggaa ... gcaattgaagGTACGATTTACTAATTGCCCATCAAACCGAGCTTGGTCAACTTATAACACT
EST: CTTGGAGCAAACTTACTACTACCGAAAGGAGCAAACTTATGAGGAAATG GTACGATTTACTAATTGCCCATCAAACCGAGCTTGGTCAACTTATAACACTEST: gi|71861253|gb|DT010308.1|DT010308
genomic: CTTGGAGCAAACTTACTACTGCTGAAAGGAGTAAACTTATGAGGAAATGgtacgaggaa ... gcaattgaagGTACGATTTACTAATTGCCCATCAAACCGAGCTTGGTCAACTTATAACACT
EST: CTTGGAGCAAACTTACTACTACCGAAAGGAGCAAACTTATGAGGAAATG GTACGATTTACTAATTGCCCATCAAACCGAGCTTGGTCAACTTATAACACT
genomic: CTTGGAGCAAACTTACTACTGCTGAAAGGAGTAAACTTATGAGGAAATGgtacgaggaa ... gcaattgaagGTACGATTTACTAATTGCCCATCAAACCGAGCTTGGTCAACTTATAACACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGAGCAAACTTACTACTGCTGAAAGGAGTAAACTTATGAGGAAATGgtacgaggaaattgatatcctgtgatctttattaactatatatttgcttttataatgttttgaatgatccattgatccgagcttgtttgaggaagctttt
TTGGAG
- GGAGCA
- - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaggaag