Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGCACCATCCATATAAACCCCTTGTAGAGGCAATAAAGAAATTCAAGGTTGCTCAAAATGCCCTTGCTCAAGTTGCTTGGAATTTTGTCAATGATGGgtatgatgggttgcttcttttttttatgcacgttattgttctttcttccttctcatcttgacctgggaagcggcatgcag

Basic information

species Vitis vinifera
transcript Vv19s0027g01670.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0027g01670.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os12g30020.1 (Oryza sativa), 5'ss of exon 5
ATGTGCACCATCCATATAAACCCCTTGTAGAGGCAATAAAGAAATTCAAGGTTGCTCAAAATGCCCTTGCTCAAGTTGCTTGGAATTTTGTCAATGATGGgtatgatgg-gttgcttcttttttttatgcacgttattgttctttcttccttct--catcttgacctgggaa-gcggcatgcag
||||||| |||||||| || ||  | || || |||||||  ||||| || |||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |   | | |   | || | | |  | | |||   ||  || |   | |  ||  || |   |||         | |||
ATGTGCATCATCCATACAAGCCTTTGGTTGAAGCAATAAGAAAATTTAAAGTTGCTCAAAATGCGCTTGCTCAGGTTGCATGGAATTTTGTCAATGATGGgtatgctattgatacccttattatctttaga-gatatcactcaatcatgtatataacacgttaaaaagggcgtatattgtacag

upper sequence: Vv19s0027g01670.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AC233979.1_FGT009 (Zea mays), 5'ss of exon 4
ATGTGCACCATCCATATAAACCCCTTGTAGAGGCAATAAAGAAATTCAAGGTTGCTCAAAATGCCCTTGCTCAAGTTGCTTGGAATTTTGTCAATGATGGgtatgatggg-ttgcttcttttttttatgcacgttattgttctttcttccttctcatcttgacctgggaagcggcatgcag
||||| ||||||| || || ||| | || || |||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |    || ||  |  |  |||   |   || |   |   | ||| | |   ||   |||   ||| ||  | |||
ATGTGAACCATCCTTACAAGCCCTTGGTTGAAGCAATAAAAATATTCAAGGTTGCTCAAAATGCACTTGCTCAAGTTGCCTGGAATTTTGTCAATGATGGgtatgctaaaattactcttcctcattacaaatagtaatccacaaacatccctatttactacgccttaaaaggggtgtacag

upper sequence: Vv19s0027g01670.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G308570_T02 (Zea mays), 5'ss of exon 13
ATGTGCACCATCCATATAAACCCCTTGTAGAGGCAATAAAGAAATTCAAGGTTGCTCAAAATGCCCTTGCTCAAGTTGCTTGGAATTTTGTCAATGATGGgtatgatggg-ttgcttcttttttttatgcacgttattgttctttcttccttctcatcttgacctgggaagcggcatgcag
||||| ||||||| || || ||| | || || |||||||| |||||  |||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |    || ||  |  |   |    |   || |   |   | | | |     ||  ||||   ||| ||  |||||
ATGTGAACCATCCTTACAAGCCCTTGGTTGAAGCAATAAAAAAATTTGAGGTTGCTCAAAATGCACTTGCGCAAGTTGCCTGGAATTTTGTCAATGATGGgtatgctaaaattactcttcatcactgcaaatagtaatccacaaacatgcctacttactataccttaaaaggggtgtgcag

upper sequence: Vv19s0027g01670.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G41040.1 (Glycine max), 5'ss of exon 4
ATGTGCACCATCCATATAAACCCCTTGTAGAGGCAATAAAGAAATTCAAGGTTGCTCAAAATGCCCTTGCTCAAGTTGCTTGGAATTTTGTCAATGATGGgtatgatgggttgcttcttttttttatgcacgttattgttctttcttccttctcatcttgacctgggaagcggcatgcag
||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||  | || |  |   ||||| |  | |  | ||  ||||  |  ||||   ||  |    ||| | |  ||||||
ATGTGCACCATCCTTATAAACCTCTTGTTGAGGCAATAAAGAAATTCAAAGTTGCTCAAAATGCCCTTGCTCAAGTTGCGTGGAATTTTGTAAATGATGGgtatga-agattaca-caaatttttgttaaggccagtggcctttgatttttctttcctgaaatgaggatgtgatatgcag

upper sequence: Vv19s0027g01670.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G17960.1 (Glycine max), 5'ss of exon 4
ATGTGCACCATCCATATAAACCCCTTGTAGAGGCAATAAAGAAATTCAAGGTTGCTCAAAATGCCCTTGCTCAAGTTGCTTGGAATTTTGTCAATGATGGgtatgatgggttgcttcttttttttatgcacgttattgttctttcttccttctcatcttgacctgggaagcggcatgcag
||||||| ||||| |||||||| ||||| |||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||  | || |    |||||||     ||    ||  ||||  |  ||||   ||  |  | ||| | |  ||||||
ATGTGCATCATCCTTATAAACCTCTTGTTGAGGCAATAAAGAAATTCAAAGTAGCTCAAAATGCCCTAGCTCAAGTTGCGTGGAATTTTGTAAATGATGGgtatga-agattacacaattttttttaaggcgagtgtggcctttgatttttctttcctgaaattaggatgtgatatgcag

upper sequence: Vv19s0027g01670.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ27727 (Selaginella moellendorffii), 5'ss of exon 4
ATGTGCACCATCCATATAAACCCCTTGTAGAGGCAATAAAGAAATTCAAGGTTGCTCAAAATGCCCTTGCTCAAGTTGCTTGGAATTTTGTCAATGATGGgtatg---------atgggttg---cttcttttttttatgca-cgttattgttctttcttccttctcatcttgacctgggaagcggcatgcag----------------
| || ||||||||||| | ||| || || |  || ||||| || ||||| ||  ||||| |||| || ||||||||||| ||||| ||||||||||||||||| |         |   || |   ||||  | |    || |  |||   || | |  |   |  |||  ||||   |    |    | ||||                
ACGTTCACCATCCATACAGACCGCTGGTGGCCGCCATAAAAAAGTTCAACGTCTCTCAACATGCGCTGGCTCAAGTTGCGTGGAACTTTGTCAATGATGGgtaagctctcgcacaccagtaggaacttcagtctcgactggagtgttggagtccgtgttgtttcatcactttgatgagatgggaatgaagcagtggaagggatgtgcag