Sequence
atgc intronic sequence ATGC exonic sequenceCAGCAGCATTGAAGCTGGTAGGAGAGGCCTTTCCATGGAGCAGTGAGAGCAATTTTATGTACACGATGGAGAATCATAACAGCGTCCTTGGGATCAGAGAgtatcctaactccttcattttaatatgcctcgattcttggttccaaatattgggtgatggaatggcattgatgctttttttttccttttaatttttttgg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0027g01090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os06g45860.1 (Oryza sativa), 5'ss of exon 4
CAGCAGCATTGAAGCTGGTAGGAGAGGCCTTTCCATGGAGCAGTGAGAGCAATTTTATGTACACGATGGAGAATCATAACAGCGTCCTTGGGATCAGAGAgtatcctaactccttcattttaatatgcctcgattcttggttccaaatattgggtgatggaatggcattgatgctttttttttccttttaatttttttgg-----
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CAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCATGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTGTGCTTGGGATAAGAGAgtatcctaccacaaaacgtttctcagatcattat----aactctattatctgactagtcaaagcatacaga-actatgcacatacatgcaaaactagtgggatat
upper sequence: Vv19s0027g01090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G00460.2 (Glycine max), 5'ss of exon 4
CAGCAGCATTGAAGCTGGTAGGAGAGGCCTTTCCATGGAGCAGTGAGAGCAATTTTATGTACACGATGGAGAATCATAACAGCGTCCTTGGGATCAGAGAgtatcctaactccttcattttaatatgcctcgattcttggttccaaatattgggtgatggaatggcattgatgctttttttttccttttaatttttttgg------
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CAGCAGCGCTGAAGCTGGTAGGAGAGGCTTTTCCATGGAGTTGTAACAGTAGTTTTATGTATACAATGGAGAATCATAATAGCGTTCTTGGAATAAGAGAgtatccta-ttcctacctgataaaaaat---aaatggtaaaccattcaatttcataat--aattgcttttggctcacttcaggagagtgaagggtaatagtgctct
upper sequence: Vv19s0027g01090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S23_133V6.1 (Physcomitrella patens), 5'ss of exon 4
CAGCAGCATTGAAGCTGGTAGGAGAGGCCTTTCCATGGAGCAGTGAGAGCAATTTTATGTACACGATGGAGAATCATAACAGCGTCCTTGGGATCAGAGAgtatcctaactccttcattttaatatgcctcgattcttggttccaaatattgggtgatggaatggcattgatgctttttttttcc--ttttaatttttttgg-------
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CATCAGCGCTGAAGCTTGTTGGAGAGACTTTCCCTTGGAGCCCAGAAAGCGAATATTGGTATACTTTGGAGAATCACAACAGTGTCCTTGGAATCCGAGAgtatcct---tttagagttttaat---tctcagtacttagtattaaa---ttgacgttgtcatgtttttgagtttcttttgtaaggatttagagcttattatgaggtttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29785459|gb|CB342456.2|CB342456EST: AATTTTATGTACACGATGGAGAATCATAACAGCGTCCTTGGGATCAGAGA ATATGCTCTCGATCGAGGAGCTTCAGCTTTTGCAATAGATATTGAAGAGGC
genomic: AATTTTATGTACACGATGGAGAATCATAACAGCGTCCTTGGGATCAGAGAgtatcctaac ... taatttctagATATGCTCTCGATCGAGGAGCTTCAGCTTTTGCAATAGATATTGAAGAGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGCAGCATTGAAGCTGGTAGGAGAGGCCTTTCCATGGAGCAGTGAGAGCAATTTTATGTACACGATGGAGAATCATAACAGCGTCCTTGGGATCAGAGAgtatcctaactccttcattttaatatgcctcgattcttggttccaaatattgggtgatggaatggcattgatgctttttttttccttttaatttttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatggaa