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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGCATGTCATAGATGGGATTCCACAGCTTATTTTTGTTCGTGCAAACTATACTATTGAGgttcgacttgctcttcttttttttttaatcatatttcacctatcaccaactggggtaactgaattattttttcttgtttcaaag

Basic information

species Vitis vinifera
transcript Vv19s0015g01950.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01950.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G12890.1 (Glycine max), 5'ss of exon 4
AGCTGCATGTCATAGATGGGATTCCACAGCTTATTTTTGTTCGTGCAAACTATACTATTGAGgttcgacttgct--cttcttttttttttaatcatatttca----cctatcaccaactggggtaactgaattattttttcttgtttcaaag-------------------
| |||||||||||||||||||||||||| ||||| ||||||||  ||| |||||||||||||||| |  ||  |  |||||  | |   |  ||| |||| |     || |  |  | |    | | | | ||   ||  ||| | ||                       
AACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGCTATACTATTGAGgttgggttttatgacttctgctatcccttttcacattttaaatcactgtttctcaattaattgattcacttggattcccttctctctccctcctcatgctttgctgaag

upper sequence: Vv19s0015g01950.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G47850.1 (Glycine max), 5'ss of exon 4
AGCTGCATGTCATAGATGGGATTCCACAGCTTATTTTTGTTCGTGCAAACTATACTATTGAGgttcgacttgct--cttcttttttttttaatcatatttca----cctatcaccaactggggtaactgaattattttttcttgtttcaaag-------------------
| |||||||||||||||||||||||||| ||||| ||||||||  |||  ||||||||||||||| || ||  |  |||||| | |   |  ||| |||| |     || |  | || |    | | ||| ||   ||  ||| | ||                       
AACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGTTATACTATTGAGgttggattttatgacttcttctatcccttttcacattttaaatcactgtttctaaattaattgattgacttggattcccttctatcctcctcctcttgctttgctgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110713432|gb|EE089350.1|EE089350
EST:     TAGATGGGATTCCACAGCTTATTTTTGTTCGTGCAAACTATACTATTGAG                         ACGGTAGAAGCAGAAAGGATCTCAGTTGATCATGTTGCTCATCTTAAACCA
genomic: TAGATGGGATTCCACAGCTTATTTTTGTTCGTGCAAACTATACTATTGAGgttcgacttg ... tgtttcaaagACGGTAGAAGCAGAAAGGATCTCAGTTGATCATGTTGCTCATCTTAAACCA
EST: gi|71856758|gb|DT005813.1|DT005813
EST:     TAGATGGGATTCCACAGCTTATTTTTGTTCGTGCAAACTATACTATTGAG                         ACGGTAGAAGCAGAAAGGATCTCAGTTGATCATGTTGCTCAT
genomic: TAGATGGGATTCCACAGCTTATTTTTGTTCGTGCAAACTATACTATTGAGgttcgacttg ... tgtttcaaagACGGTAGAAGCAGAAAGGATCTCAGTTGATCATGTTGCTCAT
EST: gi|110363635|gb|EC927237.1|EC927237
EST:     TAGATGGGATTCCACAGCTTATTTTTGTTCGTGCAAACTATACTATTGAG                         ACGGTAGAAGCAGAAAGGATCTCAGTTGATCATGTTGCTCATCTTAAACCA
genomic: TAGATGGGATTCCACAGCTTATTTTTGTTCGTGCAAACTATACTATTGAGgttcgacttg ... tgtttcaaagACGGTAGAAGCAGAAAGGATCTCAGTTGATCATGTTGCTCATCTTAAACCA
EST: gi|110368023|gb|EC931983.1|EC931983
EST:     TAGATGGGATTCCACAGCTTATTTTTGTTCGTGCAAACTATACTATTGAG                         ACGGTAGAAGCAGAAAGGATCTCAGTTGATCATGTTGCTCATCTTAAACCA
genomic: TAGATGGGATTCCACAGCTTATTTTTGTTCGTGCAAACTATACTATTGAGgttcgacttg ... tgtttcaaagACGGTAGAAGCAGAAAGGATCTCAGTTGATCATGTTGCTCATCTTAAACCA
EST: gi|349818410|gb|FQ409185.1|FQ409185
EST:     TAGATGGGATTCCCCAGCTTATTTTTGTTCGTGCAAACTATACTATTGAG                         ACGGTAGAAGCAGAAAGGATCTCAGTTGATCATGTTGCTCATCCTAAACCA
genomic: TAGATGGGATTCCACAGCTTATTTTTGTTCGTGCAAACTATACTATTGAGgttcgacttg ... tgtttcaaagACGGTAGAAGCAGAAAGGATCTCAGTTGATCATGTTGCTCATCTTAAACCA
EST: gi|110684768|gb|EE062427.1|EE062427
EST:     TAGATGGGATTCCACAGCTTATTTTTGTTCGTGCAAACTATACTATTGAG                         ACGGTAGAAGCAGAAAGGATCTCAGTTGATCATGTTGCTCATCTTAAACCA
genomic: TAGATGGGATTCCACAGCTTATTTTTGTTCGTGCAAACTATACTATTGAGgttcgacttg ... tgtttcaaagACGGTAGAAGCAGAAAGGATCTCAGTTGATCATGTTGCTCATCTTAAACCA