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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcctatagtgaccctttttttctttacagtgcaagcatgtttgcaattgccactttgataaagtgaagtactaactttcttagatttgtcttag

Basic information

species Vitis vinifera
transcript Vv19s0015g01010.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g50760.1 (Oryza sativa), 5'ss of exon 3
CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgt--gcaagcctatagtgaccctttttttctttacagtgcaagcatgtttgcaattgccactttgataaagtgaagtactaactttcttagatttgtcttag
|||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| || || || ||||||||||| ||||| ||  ||||  | |     | | | | ||||| | |   | || |      || | |    ||     | | |     |||| ||  | |     | |    | | | |
CTTCAAGCTTATTTTCTTGTGCTTGATGATATTATGGACAACTCTCAAACACGACGTGGCCAGCCTTGCTGGTTTAGGGTGCCTCAGgtcagtagcagaacaatcatcctttgtatgcat-caatttttttatatatattgttttt-ttataactgtatgaattataatccagaattgcacaggcattg

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g50050.1 (Oryza sativa), 5'ss of exon 4
CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGg--tgcaagcctatagtgaccctttttttctttacagtgcaagcatgtttgcaattgcc---actttgataaagtgaagtactaactttcttagatttgtcttag
||||| || ||||| || || ||||||||||| ||||||||||| || || || |||||  |||| || ||||| ||| |||||||||  ||  |      | | ||   |         |  || |  |  |   || |  | |       ||| |||| ||   ||  |   | ||   | |   |    
CTTCAGGCCTATTTTCTGGTTCTTGATGATATAATGGATAACTCACAAACTCGACGAGGAAAACCCTGTTGGTTTAGGCTTCCCAAGgtttgtcaagtaggattaacttgtccacatagaaatgtccttgtgttactgtagattctcgagtgttgttaaaatgt--tatgattgtactccaactaaaca---

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g50050.2 (Oryza sativa), 5'ss of exon 3
-------------CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGg--tgcaagcctatagtgaccctttttttctttacagtgcaagcatgtttgcaattgcc---actttgataaagtgaagtactaactttcttagatttgtcttag
             ||||| || ||||| || || ||||||||||| ||||||||||| || || || |||||  |||| || ||||| ||| |||||||||  ||  |      | | ||   |         |  || |  |  |   || |  | |       ||| |||| ||   ||  |   | ||   | |   |    
GAGTAACCTGCAGCTTCAGGCCTATTTTCTGGTTCTTGATGATATAATGGATAACTCACAAACTCGACGAGGAAAACCCTGTTGGTTTAGGCTTCCCAAGgtttgtcaagtaggattaacttgtccacatagaaatgtccttgtgttactgtagattctcgagtgttgttaaaatgt--tatgattgtactccaactaaaca---

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G147721_T01 (Zea mays), 5'ss of exon 3
CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcctatagtgaccctttttttctttacagtgcaagcatgtttg-caattgccactttgataaagtgaagtactaactttcttagatttgtcttag-----
|||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| || || |||||||||||||| || || ||  ||||  |   |   ||   |  |  |||| |    |    ||  || | |  |||||     ||||||     |  |||||||  |  |    | |  |||       
CTTCAAGCTTATTTTCTTGTGCTTGATGATATTATGGACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAGgt-tagatcagaagcatctatccttttttacttacca-aattatttctatcaattcttgttttgatg----gttgtactaaggtcttacactcttacttgataagt

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G098569_T01 (Zea mays), 5'ss of exon 3
CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcctatagtgaccctttttttctttacagtgcaagcatgtttgcaattgccactttgataaagtgaagtactaactttcttagatttgtcttag------
|||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| || || || ||||||||||| || || ||  ||||  |   |   || | |  |  ||||   |    | | |   | ||| | ||||   |||   |  |  |  ||||||| | |   |   |    |  |      
CTTCAAGCTTATTTTCTTGTGCTTGATGATATTATGGACAACTCCCAGACACGGCGTGGCCAGCCTTGCTGGTTTAGAGTGCCACAGgt-tagatcaggagcgtctatcctttttact----taccaaattattt-ctattgattcttgctttgatggctgtactaagtcttacactctcacttgggaagttt

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G168681_T01 (Zea mays), 5'ss of exon 4
CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcctatagtgaccctttttttctttacagtgcaagcatgtttgcaattgccactttgataaagtgaagta-ctaactttcttagatttgtcttag--------------------------
||||| || |  || ||||||||||||||||| |||||| |||| || || ||||| || || ||||||||||||||||| ||  ||||  |  | ||  |    ||      | | | | ||     |   | || | ||   |||| | |  || ||| |  | || | ||||      ||  |||                          
CTTCAGGCTTTCTTTCTTGTGCTTGATGATATCATGGATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgt-tagtcttactgaataccaaagcatttct-ctgttttttcccctgtgtagtt---acttcggtgcagagaaatttcgaattctctttttcaagtgatagctaagggtggatttcgtttgaaatag

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G12780.1 (Glycine max), 5'ss of exon 4
CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcctatagtgaccctttttttctttacagtgcaagcatgtttgcaattgccactttgataaagtgaagtactaactttcttagatttgtcttag
||||| |||||||| ||||| |||||||| |||||||||||||| || ||||| || ||||| || |||||||| || || ||||||||        | | | ||   |    | ||            || |||     | |   | ||||||||  |    ||  ||   |  | | ||   |||
CTTCAGGCATATTTTCTTGTTCTTGATGACATTATGGATAACTCTCACACACGCCGTGGTCAGCCATGCTGGTTTAGAGTGCCCAAGgtttgtagaaagaataacatgtgccatttt---------gttatctttatg-ctactgttgtgataaagcaattatct--ctagttacggtatggtgtag

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G01820.3 (Glycine max), 5'ss of exon 4
CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcctatagtgaccctttttttctttacagtgcaagcatgtttgcaattgccactttgataaagtga--agtactaactttcttagatttgtcttag
||||| |||||||| ||||| |||||||| |||||||||||||| || ||||| || || || || |||||||| || || ||||||||       | |||  |        |     |  |||  | | |  |      |||   |  |||||||| |  |   |||| |    ||    ||   |||
CTTCAGGCATATTTTCTTGTTCTTGATGACATTATGGATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAGgt------ttgtagaaaaataaacatgtgccattgtgttatcttaat----gctgctgttgggataaagtaattatctctaattactgta----tggtgtag

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G47770.1 (Arabidopsis thaliana), 5'ss of exon 4
CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcctatagtgaccctttttttctttacagtgcaagcatgtttgcaattgccactttgataaagtgaagtactaactttcttagatttgtcttag
|| ||||| |||||||||||||||||||||||||||||||||||    || || || |||||||||||||||||||| |||||  ||||        | |||   | | |||||  | ||  ||||     ||   | |   | | | | | | | ||    |                        
CTCCAAGCTTATTTCCTTGTGCTTGATGATATTATGGATAACTCTGTCACTCGCCGTGGTCAACCTTGCTGGTTCAGAGTTCCTCAGgt--------aaagttttcatattttttgtcacgctgca-----gtccactag-actattctaacacaatgttacag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718315|gb|FC067264.1|FC067264
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|161707433|gb|FC057709.1|FC057709
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTG
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTG
EST: gi|110702878|gb|EE079232.1|EE079232
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAAGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|110396453|gb|EC962139.1|EC962139
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|22013972|gb|BQ799006.1|BQ799006
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|110729204|gb|EE105291.1|EE105291
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|71877000|gb|DT026055.1|DT026055
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|30256278|gb|CB972121.1|CB972121
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|46917987|gb|CN547316.1|CN547316
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|71860763|gb|DT009818.1|DT009818
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|110698392|gb|EE075834.1|EE075834
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|77579770|gb|DV218763.1|DV218763
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|110375001|gb|EC939952.1|EC939952
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|161709928|gb|FC060567.1|FC060567
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|71855535|gb|DT004590.1|DT004590
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|30128757|gb|CB914096.1|CB914096
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|37189469|gb|CF608818.1|CF608818
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|110687343|gb|EE064671.1|EE064671
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
EST: gi|46917875|gb|CN547204.1|CN547204
EST:     ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG                         GTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT
genomic: ATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcct ... tttgtcttagGTTGGTATGATTGCTGCGAATGATGGGGTGATTCTTCGCAATCAAATCCCT