1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTCGAAATTAAAAGAACTATTCCAAAAGGCTCTGGACAGTCAAAGGATTTCAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACTGAAGgtataatctaatatatagatatgcatattgatcttctggggggaatttagttgacttatatgaatggtttaatgctgcatttattctataatttagtgcatttttcattcttttgcatgttgaaatgatcag
species | Vitis vinifera |
transcript | Vv19s0015g00920.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACTGAAG ATGAATTCAAGAATTTTTTCTCGAAGTATGGGAAAGTTGTGGAACACCAGAEST: gi|161716270|gb|FC065867.1|FC065867
genomic: CAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACTGAAGgtataatcta ... aaatgatcagATGAATTCAAGAATTTTTTCTCGAAGTATGGGAAAGTTGTGGAACACCAGA
EST: CAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACCGAAG ATGAATTCAAGAATTTTTTCTCGAAGTATGGGAAGGTTGTGGAACACCAGAEST: gi|71857093|gb|DT006148.1|DT006148
genomic: CAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACTGAAGgtataatcta ... aaatgatcagATGAATTCAAGAATTTTTTCTCGAAGTATGGGAAAGTTGTGGAACACCAGA
EST: CAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACCGAAG ATGAATTCAAGAATTTTTTCTCGAAGTATGGGAAGGTTGTGGAACACCAGAEST: gi|352769251|gb|FQ471400.1|FQ471400
genomic: CAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACTGAAGgtataatcta ... aaatgatcagATGAATTCAAGAATTTTTTCTCGAAGTATGGGAAAGTTGTGGAACACCAGA
EST: CAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACTGAAG ATGAATTCAAGAATTTTTTCTCGAAGTATGGGAAAGTTGTGGAACACCAGAEST: gi|352781290|gb|FQ467371.1|FQ467371
genomic: CAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACTGAAGgtataatcta ... aaatgatcagATGAATTCAAGAATTTTTTCTCGAAGTATGGGAAAGTTGTGGAACACCAGA
EST: CAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACTGAAG ATGAATTCAAGAATTTTTTCTCGAAGTATGGGAAAGTTGTGGAACACCAGAEST: gi|352790928|gb|FQ477376.1|FQ477376
genomic: CAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACTGAAGgtataatcta ... aaatgatcagATGAATTCAAGAATTTTTTCTCGAAGTATGGGAAAGTTGTGGAACACCAGA
EST: CAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACTGAAG ATGAATTCAAGAATTTTTTCTCGAAGTATGGGAAAGTTGTGGAACACCAGAEST: gi|71857169|gb|DT006224.1|DT006224
genomic: CAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACTGAAGgtataatcta ... aaatgatcagATGAATTCAAGAATTTTTTCTCGAAGTATGGGAAAGTTGTGGAACACCAGA
EST: CAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACCGAAG ATGAATTCAAGAATTTTTTCTCGAAGTATGGGAAGGTTGTGGAACACCAGA
genomic: CAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACTGAAGgtataatcta ... aaatgatcagATGAATTCAAGAATTTTTTCTCGAAGTATGGGAAAGTTGTGGAACACCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGAAATTAAAAGAACTATTCCAAAAGGCTCTGGACAGTCAAAGGATTTCAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACTGAAGgtataatctaatatatagatatgcatattgatcttctggggggaatttagttgacttatatgaatggtttaatgctgcatttattctataatttagtgcatttttcattcttttgcatgttgaaatgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG