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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGGAGCCATCAGCCAATGTAGTCCTCTTGGATTATATTGCCTCAGAGAAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaaccttctgtgcttccctctctatttctagagttatttccttcatttttgatctgatacaatctttcttcctccttacag

Basic information

species Vitis vinifera
transcript Vv19s0015g00910.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g00910.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os04g20230.1 (Oryza sativa), 5'ss of exon 3
TCAAGGAGCCATCAGCCAATGTAGTCCTCTTGGATTATATTGCCTCAGAGAAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaag---aaccttctgtgcttccctctctatttctagagttatttccttcatttttgatctgatacaatctttcttcctccttacag---------------
| || || |||||| ||||| | ||| |    ||| || || |  |  ||||||||||| |  |  | ||||| ||||||||||| ||||| |||||||||||||   ||   ||    | |    | | ||  |  ||  ||| |    ||  |  |    |||||   |     | | |  ||| |               
TAAAAGAACCATCAACCAATATGGTCTTAGCCGATCATGTTACAACGAAGAAATGGCAGCAAGTTGTTGATTTCGATGACCACCTCGATGATATTAGCAAgtaagttgaaaactcaacaccttaaacac-ataccatgatctatgttacccagatacggg--gatacggacacgtatacgcgatacggcgacacggggatacg

upper sequence: Vv19s0015g00910.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G028730_T02 (Zea mays), 5'ss of exon 3
TCAAGGAGCCATCAGCCAATGTAGTCCTCTTGGATTATATTGCCTCAGAGAAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaa-----ccttctgtgcttccctctctatttctagagttatttccttcatttttgatctgatacaatctttcttcctccttacag----------
| || || || ||  ||||||| |||||    ||| || || |  || |||||||| || | ||  | ||||| ||||||||||||||||| ||||||||||||| |       ||   | |   |   |  |  ||  |    |     |  | | || ||   | || |  ||| |   | | |              
TAAAAGAACCTTCTACCAATGTTGTCCTAGCTGATCATGTTACAACAAAGAAATGGGAGAAAATTGTTGATTTCGATGACCACCTTGATGATATTAGCAAgtaagtaaaatatttttcttacaagcacttggagatcatgcccgaaaaattataatattaataaaaaactagttttgtgtgtgcgtgtgtgtgtgttaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110388650|gb|EC953423.1|EC953423
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTTTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|110369539|gb|EC933702.1|EC933702
EST:     CATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTTTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: CATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|110399009|gb|EC965494.1|EC965494
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|110717435|gb|EE093287.1|EE093287
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|27580981|gb|CB003676.1|CB003676
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|32247055|gb|CD712874.1|CD712874
EST:     AATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
genomic: AATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|110371810|gb|EC935934.1|EC935934
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTTTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|110717889|gb|EE094139.1|EE094139
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|22013908|gb|BQ798942.1|BQ798942
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTTTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|351012536|gb|FQ430100.1|FQ430100
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|110697601|gb|EE074734.1|EE074734
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTTTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|110389592|gb|EC954445.1|EC954445
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|27579888|gb|CB002583.1|CB002583
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|110701668|gb|EE079504.1|EE079504
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|34543663|gb|CF511895.1|CF511895
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTTTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|110406646|gb|EC972226.1|EC972226
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|161719030|gb|FC067650.1|FC067650
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTTTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|34548452|gb|CF516684.1|CF516684
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTTTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|27586625|gb|CB009320.1|CB009320
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|110701833|gb|EE079853.1|EE079853
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGGGCGTTCAA
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|352787156|gb|FQ477776.1|FQ477776
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTTTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|110407381|gb|EC972981.1|EC972981
EST:     AAATGGCAGGATATCATAGATTTTGATGACCCCCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|32246719|gb|CD712538.1|CD712538
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|110702351|gb|EE080963.1|EE080963
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGGGGCGT-CA
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAG-CGTTCA
EST: gi|34416767|gb|CF415521.1|CF415521
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTTTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|34548537|gb|CF516769.1|CF516769
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTTTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|110399814|gb|EC966341.1|EC966341
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGGGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|110408023|gb|EC973644.1|EC973644
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTTCAG
EST: gi|110717358|gb|EE093146.1|EE093146
EST:     AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAA                         GGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGGGCGTTTCA
genomic: AAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAgtaagaacct ... ctccttacagGGATTGGCTGAACCCAGAACTCTTCAAGTAATATTTGCTATGAGCGTT-CA