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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATAATACTGAGAAACCTTATGTCATTGCAGCAAAGTTGCAAGCTCTTAGTCCGAAGTATAATTCAGTGATGAATCACATCAGGATACATCTACCTGAGgtaaaggagttattaatataaccttaacctatttctgtataatgcttacttggttttgaacttttattctttcgtctgcag

Basic information

species Vitis vinifera
transcript Vv19s0014g05130.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g05130.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G36280.1 (Glycine max), 5'ss of exon 4
AAATAATACTGAGAAACCTTATGTCATTGCAGCAAAGTTGCAAGCTCTTAGTCCGAAGTATAATTCAGTGATGAATCACATCAGGATACATCTACCTGAGgtaaag----------gagttattaatataaccttaacctatttctgtataatgcttacttggttttgaacttttattctttcgtctgcag--------------------
|||||  |||||||| ||  | || |||||||||||  ||||||| |||||||| |||||||||||||||||||| |||||| |||||||||| || ||||||||           |  |    |||| | | || |  |  |    |||||  |  | |  || ||     | | |  |      |||                      
AAATACCACTGAGAAGCCAAAAGTTATTGCAGCAAAACTGCAAGCACTTAGTCCCAAGTATAATTCAGTGATGAACCACATCCGGATACATCTCCCAGAGgtaaaaataaggcatagtatagcaaataaagcttttatttgatatcttataa--ccaagtaagtctttggtgtctgtgatgcttattgccattatgcttttttcttagcag

upper sequence: Vv19s0014g05130.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G34280.1 (Glycine max), 5'ss of exon 4
AAATAATACTGAGAAACCTTATGTCATTGCAGCAAAGTTGCAAGCTCTTAGTCCGAAGTATAATTCAGTGATGAATCACATCAGGATACATCTACCTGAGgtaaaggagttattaatataaccttaaccta--tttctgtataat-gcttacttggttttgaacttttattctttcgtctgcag---------------------------
|||||  |||||||| ||  | || |||||||||||  ||||||| |||||||| |||||||||||||||||||| |||||| |||||||||| || |||||||   |  |||  |   |     ||   |   || | | | || |||||   | |  | ||| |||  |   |    |||                             
AAATACCACTGAGAAGCCAAAAGTAATTGCAGCAAAACTGCAAGCACTTAGTCCCAAGTATAATTCAGTGATGAACCACATCCGGATACATCTCCCAGAGgtaatatatatatatagcaattagcaagtaaagcttttatttgatagcttataagctggtaaacctttggttcctgtgatgcttattgtcatgatgtttttttcataacag

upper sequence: Vv19s0014g05130.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G16550.1 (Glycine max), 5'ss of exon 4
AAATAATACTGAGAAACCTTATGTCATTGCAGCAAAGTTGCAAGCTCTTAGTCCGAAGTATAATTCAGTGATGAATCACATCAGGATACATCTACCTGAGgtaaaggagttattaatataaccttaacctatttctgtataatgc-ttacttggttttgaacttttattctttcgtctgcag------------------
||||| ||||||||| ||  | || ||||| |||||| ||||||| |||||||| |||||||||||||| |||||||||||  |||||||||| || |||||||| | | ||  | ||| |    ||  ||||| ||| || | | |||     ||||   || | || ||| | ||||                     
AAATACTACTGAGAAGCCGAAAGTAATTGCTGCAAAGCTGCAAGCACTTAGTCCTAAGTATAATTCAGTAATGAATCACATTCGGATACATCTTCCAGAGgtaaaagtgatagaattatgaagcaaaattatttttgtgtagttcattaaccttttttc--ctgtgatgcttacttctgtgatactcttttcattaacag

upper sequence: Vv19s0014g05130.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G41630.1 (Glycine max), 5'ss of exon 4
AAATAATACTGAGAAACCTTATGTCATTGCAGCAAAGTTGCAAGCTCTTAGTCCGAAGTATAATTCAGTGATGAATCACATCAGGATACATCTACCTGAGgtaaaggagttattaa-------tataaccttaacctatttctgtataa-tgcttacttggttttgaacttttattctttcgtctgcag------------
||||| ||||||||| ||  | || ||||| |||||| ||||||| |||||||| |||||||| ||||| |||||||||||  |||||||||| || ||||||||   | |   ||       ||| |    ||  ||||| ||||||| || |||     ||||   || | || ||| | ||   |             
AAATACTACTGAGAAGCCAAAAGTAATTGCTGCAAAGCTGCAAGCACTTAGTCCTAAGTATAACTCAGTAATGAATCACATTCGGATACATCTTCCAGAGgtaaaaatgatggaaaaaaaaattatgaatcaaagttatttttgtataactgattaaccttttttttcctgtgatgcttacttccataatacatttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110424737|gb|EC991107.1|EC991107
EST:     GTCCAAAGTATAATTCAGTGATGAATCACATCAGGATACATCTACCTGAG                         TTGTTTCCTAGTCTTAACAAGATAGTGTTCCTCGACGATGACATCGTGGTT
genomic: GTCCGAAGTATAATTCAGTGATGAATCACATCAGGATACATCTACCTGAGgtaaaggagt ... tcgtctgcagTTGTTTCCTAGTCTTAACAAGATAGTGTTCCTCGACGATGACATCGTGGTT
EST: gi|122690411|gb|EC952332.1|EC952332
EST:     CAGTGATGAATCACATCAGGATACATCTACCTGAG                         TTGTTTCCTAGTCTAAACAAGATAGTGTTCCTCGACGATGACATCGTGGTT
genomic: CAGTGATGAATCACATCAGGATACATCTACCTGAGgtaaaggagt ... tcgtctgcagTTGTTTCCTAGTCTTAACAAGATAGTGTTCCTCGACGATGACATCGTGGTT