Sequence
atgc intronic sequence ATGC exonic sequenceATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGGgtaagctttcatctaatatgcactaaaacatggatctattgtgtgtttgtgcgtaaaaacatgctttcatgttgtgcttatgttgattattttatcttactccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os08g04420.1 (Oryza sativa), 5'ss of exon 4
ATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGGgtaagctttcatctaatatgcactaaaacatggatctattgtgtgtttgtgcgtaaaaacatgctttcatgttgtgcttatgttgattattttatcttactccag
||| || || | | | |||||||||||| | |||||||| | ||||| || ||||||||||||| || |||||||||||| ||| | | | || || |||| || | | || | | | | || | |||| || | |
GTGAAAACATTGCACATCTCCGGTGGGATTTGAGGGTAAACATAGCTCTGGATGTTGCTCGGGGCTTGGAGTACCTACATGATGGGgtaggctgttgtatttcataattggaagcatg-atacactatgaaatgcaaccagattccttgatctcattcaactctagcgcag--------------------
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G16650.1 (Glycine max), 5'ss of exon 4
ATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGGgtaagctttcatctaatatgcactaaaacatggatctattgtgtgtttgtgc-gtaaaaacatgctttcatgttgtgcttatgttgattattttatcttactccag
||| | |||| || || | |||||||||||| || |||||||||||||||||||| | |||||||| ||||||||| |||||||||| || ||| | || |||| | || | | || | ||| | | | || | || | | | |||
GTGATGTGAATGAAGCACTGTGCTGGGATTTGAGGGTTCACATAGCTTTAGATGTGGCACGAGGCTTGGAATATCTTCATAATGGGgtaagtttacatgtgatttgca--acaatttaattttactttgtatgtatattgttataatagtatgtattgtcacttcag-------------------------
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G41510.1 (Glycine max), 5'ss of exon 5
ATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGGgtaagctttcatctaatatgcactaaaacatggatctattgtgtgtttgtgcgtaa--aaacatgctttcatgttgtgcttatgttgattattttatcttactccag
||| | |||| || || |||||||||||| || ||||||||||||||||||||| |||||||| ||||||||| |||||||||| || ||| || ||||| | | || |||| ||| | | ||| | | | |||||| |
GTGATGTGAATGAAGCACTGTCCTGGGATTTGAGGGTTCCCATAGCTTTAGATGTGGCAAGAGGCTTGGAATATCTTCATAATGGGgtaagtttccatgagatctgcacatatttaattatactttgtatgtatattgttaattatatgtactttcacttcag------------------------------
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G36140.2 (Glycine max), 5'ss of exon 5
ATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGGgtaagctttcatctaatatgcactaaaacatggatctattgtgtgtttgtgcgtaaaaacatgctttcatgttgtgcttatgttgattattttatcttactccag
||| || ||| | | | |||||||||||| || | ||||||||||| || ||||| ||| | ||||||||||||||||||||||| | | || | ||| | | | | || | | ||| |||| || || | |
GTGAAGAGAATGGAGCTCTTGGCTGGGATTTGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGATGGGgtaagtgtcccgtgaac-taaactgagataattctgctttctctatttagttataaatgtatttgttgacacttcag----------------------------
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G34410.1 (Glycine max), 5'ss of exon 5
ATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGGgtaagctttcatctaatatgcactaaaacatggatctattgtgtgtttgtgcgtaaaaacatgctttcatgttgtgcttatgttgattattttatcttactccag
||| || ||| | || | |||||||||||| || | ||||||||||| || ||||| ||| | |||||||||||||| |||||||| ||||| | || | |||| | | | | || | | ||| ||| || || | |
GTGAAGAGAATGGAGCTCTGGGCTGGGATTTGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGACGGGgtaagtgttcatgtgatctacactgagataattctgctttctctatttagttataactgtatttgttgacactccag----------------------------
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G54590.2 (Arabidopsis thaliana), 5'ss of exon 4
ATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGGgtaagctttcatctaatatgcactaaaacatggatctattgtgtgtttgtgcgtaaaaacatgctttcatgttgtgcttatgttgattattttatcttactccag
|| || |||| || |||| ||||||||||| | || || |||||||| |||||| | || | ||||||||||||||||||||||||| |||| || ||| | | || || | | || |||| | | | || | | ||| || |
GCGAAAAACATGAACCGCTGAGCTGGGATTTGAGAGTATATATTGCTTTAGACGTGGCACGTGGTCTAGAGTATCTTCATGATGGGgtaagctgcttgctaa---------aaccattcaccattttaatgcatctcttaaacaacaacttcaaaactcatgttctaatcaattgttccag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713605|gb|FC063415.1|FC063415EST: TTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGG GCTGTTCCTCCTGTCATACACCGGGACATCAAATCATCCAATATTCTATTG
genomic: TTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGGgtaagctttc ... cttactccagGCTGTTCCTCCTGTCATACACCGGGACATCAAATCATCCAATATTCTATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGGgtaagctttcatctaatatgcactaaaacatggatctattgtgtgtttgtgcgtaaaaacatgctttcatgttgtgcttatgttgattattttatcttactccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG