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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacctcaaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag

Basic information

species Vitis vinifera
transcript Vv19s0014g02320.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os11g25920.1 (Oryza sativa), 5'ss of exon 4
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacct-caaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
||| ||||| || |||||||| ||||| |||||||| ||||| || ||||| || || || || ||  || |||||||||||||||| ||||||||||| ||| |||  |   ||| ||  | |   | ||||||||     | |            |   || |  ||| | ||   |    |   |  |   |  | |                                                                                            
GGGAAAGGTGGCGTCTGATAAATGTCACAAATGGGTCTTCAAGGAACCTTCTGAATGCGAGCCCAACATCGCCAACTACTGGCAGAGCTCTTTTGATGCCgtatgtaccatctcctgcactctcctcctttctctttctgcagagccccctg---gcccccttgcttttggggggaagagaccttattactgctactactaca-----------------------------------------------------------------------------------------

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G132251_T01 (Zea mays), 5'ss of exon 4
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacctcaaacacaaacgttctctt--ttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
||| ||||| || |||||||| ||||| |||||||| ||||| || ||||| || || || || ||  ||||||||||||||||||| ||||| || || ||| |||    | || ||  ||    |||  || |  |    || |       |  | ||   |     | | |  |||     |  |  |                                                                                                      
GGGAAAGGTGGCCTCTGATAAATGTCACAAATGGGTCTTCAAGGAACCTTCTGAATGCGAGCCCAACATCTCCAACTACTGGCAGAGCTCTTTCGACGCAgtacgtaacgtacccccatgcatcttcgtcgtcatcatcagctgtgccccctctgca-ctgcatctttctctttctgcagtctctctgccacccctgctgc--------------------------------------------------------------------------------------------

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G302293_T01 (Zea mays), 5'ss of exon 4
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacctcaaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
||| ||||| || |||||||| ||||| |||||||| ||||| || ||||| || || || || ||  ||||||||||||||||||| || || || || ||| |||      |    | ||  | |  |  || |  |   | |  ||  |    ||     |  |   ||   ||  || |   |       |        | |||                                                                                   
GGGAAAGGTGGCCTCTGATAAATGTCACAAATGGGTCTTCAAGGAACCTTCTGAATGCGAGCCCAACATCTCCAACTACTGGCAGAGCTCCTTCGACGCAgtacgta------ctatcagcagcagctgtgcctctgcacccgcttctttctctttctgcactctgtaacgta--cacgtactccatccccacctgttccaaaacaaa-----------------------------------------------------------------------------------

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 4
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtagg-agaacctcaaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
|||||| ||||||||||||||||| || || ||||| || ||||||||  |||| |||||||||||| ||||||||||||||||||| || |||||||||||| |   | | |  |||||       | | | | |   ||      | || |        || |  || |||      ||| |   | | |   ||||| | ||                                                                                       
GGGGAAAGTTGCATCTGATAAGTGCCACAAGTGGGTCTTTAAAGAGCCCACAGAATGTGAACCAAATATCTCCAACTACTGGCAGAGCTCCTTTGATGCTgtatgagtgcatattctcaactctctccctccccatccaatcacccttctgct----tctcttccttttttgtttatttataatatataaatc--taaatattgat--------------------------------------------------------------------------------------

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G35490.2 (Glycine max), 5'ss of exon 3
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacctcaaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
|||||| ||||||||||||||||| || || ||||| || ||||||||  |||| |||||||||||| ||||||||||||||||||| || |||||||||||| ||  |   |     ||| |   |  ||    |  |||     ||  |     ||   | |  || |||      ||| |   | | |   ||||| | ||                                                                                       
GGGGAAAGTTGCATCTGATAAGTGCCACAAGTGGGTCTTTAAAGAGCCCACAGAATGTGAACCAAATATCTCCAACTACTGGCAGAGCTCCTTTGATGCTgtatgtgtgcatattctcaactctctccctcctcatccattcacccttctacttctct---tccttttttgtttatttataatatataaatc--taaatatagat--------------------------------------------------------------------------------------

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 4
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacc---tcaaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
||| |||||| ||||||||||||| || |||||||| |||||||||||| | || ||||| || ||| |||||||||||||||||||||| |||||||||||| | |   || ||   ||| |  |||     ||  | ||||    |  ||  |  |  |   || | |  | |  | ||| | || |  |||  | ||  |                                                                                           
GGGAAAGGTTACATCTGATAAGTGCCACAAATGGGTCTTCAAAGAGCCTACGGAATGTGAGCCTAATATCTCCAACTACTGGCAGAGTTCCTTTGATGCTgtacgcatctgatccctctcacattcaataacacttctctgatctttttgtttttggagttgtctaacttattttaagtaaa-aatgag--attaaacaacct-------------------------------------------------------------------------------------------

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G27400.1 (Glycine max), 5'ss of exon 4
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacc---tcaaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
||| |||||| ||||||||||||| || |||||||| || ||||||||| | || ||||| || ||| ||||||||||||||||||| || |||||||||||| | |   || ||   ||| |  |||     ||  | ||||    | |||  |  |  |   || | ||   |  | ||| | ||     ||  | ||  |                                                                                           
GGGAAAGGTTACATCTGATAAGTGCCACAAATGGGTCTTTAAAGAGCCTACGGAATGTGAGCCTAATATCTCCAACTACTGGCAGAGCTCCTTTGATGCTgtatgcatttgatccctctcacattcaataacacttctctgatcttttttttt-tggagttgtctaac-ttacctaagtaaa-aatgaa--gttaaacaacctca-----------------------------------------------------------------------------------------

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G53900.2 (Arabidopsis thaliana), 5'ss of exon 4
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacctcaaacacaaacgttctcttttgattgggtat-----ttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
||| || ||||| |||||||| ||||| || |||||||||||||| || || || | |||||||||| |  | || |||||||| |||||||||||||||||| ||         |||| |  |||  || | ||||| || | | |     || || |  || ||  | |   |      ||| |||     ||||  |  |                                                                                             
GGGTAAAGTTGCTTCTGATAAATGTCACAAGTGGGTTTTCAAAGAACCATCTGAATCTGAACCAAATCTTGCTAATTACTGGCAAAGTTCTTTTGATGCTgtacgt-------tttcaatcttaaattttattttttggttagatgtagaaatttatgatcctgatggctaccttacacttaaa-agtcaaaaatttattgcag--------------------------------------------------------------------------------------------

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G15240.2 (Arabidopsis thaliana), 5'ss of exon 4
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacctcaaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
|||||||||||| ||||| || || ||||||||||||||||| || |   | || | |||| | |||| ||| |  |||||||| || || || ||||||||||||  |   |    | |   || | ||  | | | ||  | | ||| ||         | | | | |||  ||     | |    || |   |||     | |||||                                                                                 
GGGGAAGGTTGCTTCTGACAAATGCCATAAATGGGTTTTCAAGGAACAAACTGAATCTGAATCTAATGCCTCTAGTTACTGGCAAAGCTCATTCGATGCTgtaagtttgtttataatataatgaagcatttacgtataataagat-tttaat--------ctgcaaatttgtaagccggctgagatctatctctaaaa-----aaaaatgcag------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719944|gb|FC068689.1|FC068689
EST:     CAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCT                         CTTCCTCCTGAATGGACCGATCAGTTTGAGTCAGGCATTCAG
genomic: CAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtagga ... ttaattgcagCTTCCTCCTGAATGGACCGATCAGTTTGAGTCAGGCATTCAG