Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacctcaaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag

Basic information

species Vitis vinifera
transcript Vv19s0014g02320.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os11g25920.1 (Oryza sativa), 5'ss of exon 4
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacct-caaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
||| ||||| || |||||||| ||||| |||||||| ||||| || ||||| || || || || || || |||||||||||||||| ||||||||||| ||| ||| | ||| || | | | |||||||| | | | || | ||| | || | | | | | | |
GGGAAAGGTGGCGTCTGATAAATGTCACAAATGGGTCTTCAAGGAACCTTCTGAATGCGAGCCCAACATCGCCAACTACTGGCAGAGCTCTTTTGATGCCgtatgtaccatctcctgcactctcctcctttctctttctgcagagccccctg---gcccccttgcttttggggggaagagaccttattactgctactactaca-----------------------------------------------------------------------------------------

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G132251_T01 (Zea mays), 5'ss of exon 4
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacctcaaacacaaacgttctctt--ttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
||| ||||| || |||||||| ||||| |||||||| ||||| || ||||| || || || || || ||||||||||||||||||| ||||| || || ||| ||| | || || || ||| || | | || | | | || | | | | ||| | | |
GGGAAAGGTGGCCTCTGATAAATGTCACAAATGGGTCTTCAAGGAACCTTCTGAATGCGAGCCCAACATCTCCAACTACTGGCAGAGCTCTTTCGACGCAgtacgtaacgtacccccatgcatcttcgtcgtcatcatcagctgtgccccctctgca-ctgcatctttctctttctgcagtctctctgccacccctgctgc--------------------------------------------------------------------------------------------

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G302293_T01 (Zea mays), 5'ss of exon 4
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacctcaaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
||| ||||| || |||||||| ||||| |||||||| ||||| || ||||| || || || || || ||||||||||||||||||| || || || || ||| ||| | | || | | | || | | | | || | || | | || || || | | | | |||
GGGAAAGGTGGCCTCTGATAAATGTCACAAATGGGTCTTCAAGGAACCTTCTGAATGCGAGCCCAACATCTCCAACTACTGGCAGAGCTCCTTCGACGCAgtacgta------ctatcagcagcagctgtgcctctgcacccgcttctttctctttctgcactctgtaacgta--cacgtactccatccccacctgttccaaaacaaa-----------------------------------------------------------------------------------

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 4
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtagg-agaacctcaaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
|||||| ||||||||||||||||| || || ||||| || |||||||| |||| |||||||||||| ||||||||||||||||||| || |||||||||||| | | | | ||||| | | | | | || | || | || | || ||| ||| | | | | ||||| | ||
GGGGAAAGTTGCATCTGATAAGTGCCACAAGTGGGTCTTTAAAGAGCCCACAGAATGTGAACCAAATATCTCCAACTACTGGCAGAGCTCCTTTGATGCTgtatgagtgcatattctcaactctctccctccccatccaatcacccttctgct----tctcttccttttttgtttatttataatatataaatc--taaatattgat--------------------------------------------------------------------------------------

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G35490.2 (Glycine max), 5'ss of exon 3
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacctcaaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
|||||| ||||||||||||||||| || || ||||| || |||||||| |||| |||||||||||| ||||||||||||||||||| || |||||||||||| || | | ||| | | || | ||| || | || | | || ||| ||| | | | | ||||| | ||
GGGGAAAGTTGCATCTGATAAGTGCCACAAGTGGGTCTTTAAAGAGCCCACAGAATGTGAACCAAATATCTCCAACTACTGGCAGAGCTCCTTTGATGCTgtatgtgtgcatattctcaactctctccctcctcatccattcacccttctacttctct---tccttttttgtttatttataatatataaatc--taaatatagat--------------------------------------------------------------------------------------

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 4
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacc---tcaaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
||| |||||| ||||||||||||| || |||||||| |||||||||||| | || ||||| || ||| |||||||||||||||||||||| |||||||||||| | | || || ||| | ||| || | |||| | || | | | || | | | | | ||| | || | ||| | || |
GGGAAAGGTTACATCTGATAAGTGCCACAAATGGGTCTTCAAAGAGCCTACGGAATGTGAGCCTAATATCTCCAACTACTGGCAGAGTTCCTTTGATGCTgtacgcatctgatccctctcacattcaataacacttctctgatctttttgtttttggagttgtctaacttattttaagtaaa-aatgag--attaaacaacct-------------------------------------------------------------------------------------------

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G27400.1 (Glycine max), 5'ss of exon 4
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacc---tcaaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
||| |||||| ||||||||||||| || |||||||| || ||||||||| | || ||||| || ||| ||||||||||||||||||| || |||||||||||| | | || || ||| | ||| || | |||| | ||| | | | || | || | | ||| | || || | || |
GGGAAAGGTTACATCTGATAAGTGCCACAAATGGGTCTTTAAAGAGCCTACGGAATGTGAGCCTAATATCTCCAACTACTGGCAGAGCTCCTTTGATGCTgtatgcatttgatccctctcacattcaataacacttctctgatcttttttttt-tggagttgtctaac-ttacctaagtaaa-aatgaa--gttaaacaacctca-----------------------------------------------------------------------------------------

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G53900.2 (Arabidopsis thaliana), 5'ss of exon 4
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacctcaaacacaaacgttctcttttgattgggtat-----ttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
||| || ||||| |||||||| ||||| || |||||||||||||| || || || | |||||||||| | | || |||||||| |||||||||||||||||| || |||| | ||| || | ||||| || | | | || || | || || | | | ||| ||| |||| | |
GGGTAAAGTTGCTTCTGATAAATGTCACAAGTGGGTTTTCAAAGAACCATCTGAATCTGAACCAAATCTTGCTAATTACTGGCAAAGTTCTTTTGATGCTgtacgt-------tttcaatcttaaattttattttttggttagatgtagaaatttatgatcctgatggctaccttacacttaaa-agtcaaaaatttattgcag--------------------------------------------------------------------------------------------

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G15240.2 (Arabidopsis thaliana), 5'ss of exon 4
GGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtaggagaacctcaaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtggtctattatatgttaatgattgatgatgttcttagcttttggttgaattaattgcag
|||||||||||| ||||| || || ||||||||||||||||| || | | || | |||| | |||| ||| | |||||||| || || || |||||||||||| | | | | || | || | | | || | | ||| || | | | | ||| || | | || | ||| | |||||
GGGGAAGGTTGCTTCTGACAAATGCCATAAATGGGTTTTCAAGGAACAAACTGAATCTGAATCTAATGCCTCTAGTTACTGGCAAAGCTCATTCGATGCTgtaagtttgtttataatataatgaagcatttacgtataataagat-tttaat--------ctgcaaatttgtaagccggctgagatctatctctaaaa-----aaaaatgcag------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719944|gb|FC068689.1|FC068689
EST:     CAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCT                         CTTCCTCCTGAATGGACCGATCAGTTTGAGTCAGGCATTCAG
genomic: CAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTgtaagtagga ... ttaattgcagCTTCCTCCTGAATGGACCGATCAGTTTGAGTCAGGCATTCAG