Sequence
atgc intronic sequence ATGC exonic sequenceCGTGTTGACACAGCTTTGAAAAACATAGGCATAAATGAACGTGTTCCTTACAATGCACCTCTAATTCAGTTCTCTTCTTGGATGGGTGGTGATCGTGATGgtatgagtcttcttcacaaacaaatatatattcaacttattttcttgaattataagcattgcttgttaatttaggaatggaggaaattagcaaaacattg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os08g27840.1 (Oryza sativa), 5'ss of exon 4
CGTGTTGACACAGCTTTGAAAAACATAGGCATAAATGAACGTGTTCCTTACAATGCACCTCTAATTCAGTTCTCTTCTTGGATGGGTGGTGATCGTGATGgtatg--agtcttcttcacaaacaaatatata-ttcaa--cttattttcttga--attataagcattgcttgttaatttaggaatggaggaaattagcaaaacattg
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CGTCTGGACACTGCCTTGAAGAACATCGGAATTGATGAGCGTGTTCCTTATAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaaggatggcttttgacttctgtatagttcagttcttgtgcatttaataattttgtgcattgc--accaatttag--------------------------
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os09g14670.1 (Oryza sativa), 5'ss of exon 4
CGTGTTGACACAGCTTTGAAAAACATAGGCATAAATGAACGTGTTCCTTACAATGCACCTCTAATTCAGTTCTCTTCTTGGATGGGTGGTGATCGTGATGgtatgagtcttcttcacaaacaaatatatattcaacttattttcttgaattataagcattgcttgttaatttaggaatggaggaaattagcaaaacattg-------------------------------------------------------
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CGTGTGGATACTGCATTGAAGAACATCGGTATCGACGAGCGTGTTCCTTACAATGCTCCTCTTATTCAGTTCTCGTCTTGGATGGGAGGAGATCGTGATGgtgagaaacatatctattttgttgttggttcttagcactatgccttataa-ataattacagcacaatgaatcctctttagatgttgtctttaaattactaccacttaggagataccatgtctgtatgcactctaaatttcaaatgacctttacag
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g55350.1 (Oryza sativa), 5'ss of exon 6
CGTGTTGACACAGCTTTGAAAAACATAGGCATAAATGAACGTGTTCCTTACAATGCACCTCTAATTCAGTTCTCTTCTTGGATGGGTGGTGATCGTGATGgtatgagtcttcttcacaaacaaatatatattcaacttattttcttgaattataagcattgcttgttaatttaggaatggaggaaattagcaaaacattg
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AGGGTTGATACTGCCCTTAAGAACATTGGCATAAACGAGCGAGTGCCCTATAATGCTCCTCTTATTCAATTTTCTTCTTGGATGGGTGGAGACCGTGATGgtatgttacatctat-catat---catgtttgcaacatagttaattaattgtgaaattatggtt-ttaatattgatgtggactacag-------------
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G473001_T02 (Zea mays), 5'ss of exon 3
CGTGTTGACACAGCTTTGAAAAACATAGGCATAAATGAACGTGTTCCTTACAATGCACCTCTAATTCAGTTCTCTTCTTGGATGGGTGGTGATCGTGATGgta--tgagtcttcttcacaaacaaat---atatattcaacttattttcttgaat------tataagcattgcttgttaat-------ttaggaatgg--aggaaattagcaaaacattg------------------------------------------------------------
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CGGGTTGATACTGCATTGAAGAACATTGGGATTAACGAGCGTGTTCCTTACAATGCACCTCTTATTCAATTCTCTTCTTGGATGGGGGGAGATCGTGATGgtgagtgacacatctctacatatttgtcttgtcttctcatggcattatattaaatatgcagtatttgcagcacctattattatctttgtttctagtggttaggaagatgattattcattgtgcctgtgtctgcggtttgcacctctgtcctattctaaagcaatgtctctacaaatgcag
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 4
CGTGTTGACACAGCTTTGAAAAACATAGGCATAAATGAACGTGTTCCTTACAATGCACCTCTAATTCAGTTCTCTTCTTGGATGGGTGGTGATCGTGATGgtatg-agtcttct-tcacaaacaaatatatattcaacttattttcttgaattataagcattgcttgttaatttaggaatggaggaaat-tagcaaaacattg-------------
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AGGGTTGACACTGCTCTTAAGAACATTGGCATAAATGAGCGGTTGCCATATAATGCCCCTATCATTCAGTTTTCTTCTTGGATGGGTGGTGACCGTGATGgtacatagcattctctctcccttatttggatagtatatttgatgtgctgaatcat--gcaactgtagttcacaagaaagaagtgcaaatataactctgaactgatgtccatgacag
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G09810.1 (Glycine max), 5'ss of exon 5
CGTGTTGACACAGCTTTGAAAAACATAGGCATAAATGAACGTGTTCCTTACAATGCACCTCTAATTCAGTTCTCTTCTTGGATGGGTGGTGATCGTGATGgtatgagtcttcttcacaaacaaatatatattcaacttattttcttgaattataagcattgcttgttaatttaggaatg-gaggaaattagcaaaacattg-
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CGTGTTGATACAGCTTTGAAGAATATAGGGATCAACGAACGTGTCCCTTATAATGCTCCTCTCATTCAATTTTCTTCTTGGATGGGTGGAGATCGTGATGgtaggttcttatttctcagtataaaatgaaggagaat-gtttacaagtgctctta-cgatactagttaaggaataaaagtgaaaagtttattatgaaaaagt
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G34560.1 (Glycine max), 5'ss of exon 5
CGTGTTGACACAGCTTTGAAAAACATAGGCATAAATGAACGTGTTCCTTACAATGCACCTCTAATTCAGTTCTCTTCTTGGATGGGTGGTGATCGTGATGgtatgagtcttcttcacaaacaaatatatattcaacttattttcttgaattataagcattgcttgttaatttaggaatggaggaaattagcaaaacattg
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CGTGTAGACACAGCTTTGAACAATATAGGGATTAAAGAGCGTGTTCCTTATAATGCTCCCCTTATTCAATTTTCTTCTTGGATGGGTGGTGATCGGGATGgtattagtcttatttgtgattttaaaaa-atagtgtatattatcgtagtatactggacaaatggaatgatatgcaaattttatgttccaatatgatacag
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G33380.1 (Glycine max), 5'ss of exon 4
CGTGTTGACACAGCTTTGAAAAACATAGGCATAAATGAACGTGTTCCTTACAATGCACCTCTAATTCAGTTCTCTTCTTGGATGGGTGGTGATCGTGATGgtatgagtcttcttcacaaacaaatatatattcaacttattttcttgaattataagcattgcttgttaatttaggaatggaggaaattagcaaaacattg----
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CGTGTTGATACAGCTTTGAAGAATATAGGGATCAATGAGCGTGTCCCTTATAATGCTCCTCTCATTCAATTTTCCTCTTGGATGGGTGGAGATCGTGATGgtatgttcttatttctcagtataaaatgaaggagaat-gttaacaagtgctcttatgatatactgttca---aggaataaaagtgaaaagtttattatgaaaaa
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G35840.1 (Glycine max), 5'ss of exon 4
CGTGTTGACACAGCTTTGAAAAACATAGGCATAAATGAACGTGTTCCTTACAATGCACCTCTAATTCAGTTCTCTTCTTGGATGGGTGGTGATCGTGATGgtatgagtcttcttcacaaacaaatatatattcaacttattttcttgaattataagcattgcttgttaatttaggaatggaggaaattagcaaaacattg
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CGTGTAGACACAGCTTTGAACAATATCGGGATTAAAGAGCGTGTTCCTTATAATGCTCCCCTTATTCAATTTTCTTCTTGGATGGGGGGTGATCGCGATGgtattagtcttatttgtgattaaaaaaa-atagtgtatattatcatagtacactggacatatggaatgatatgcaaattaaatatggta-cag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110699775|gb|EE077068.1|EE077068EST: CTTGGATGGGTGGTGATCGTGATG GTAACCCAAGGGTGACTCCTGAGGTCACAAGGGATGTTTGCTTATTGGCTA
genomic: CTTGGATGGGTGGTGATCGTGATGgtatgagtct ... tgaaatgcagGTAACCCAAGGGTGACTCCTGAGGTCACAAGGGATGTTTGCTTATTGGCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTGTTGACACAGCTTTGAAAAACATAGGCATAAATGAACGTGTTCCTTACAATGCACCTCTAATTCAGTTCTCTTCTTGGATGGGTGGTGATCGTGATGgtatgagtcttcttcacaaacaaatatatattcaacttattttcttgaattataagcattgcttgttaatttaggaatggaggaaattagcaaaacattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaaa