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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACAGCAGGGTTCATATCCTATTAAGCTGTTCTACACCTCCAACATGCCCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagctttaagcttgtatacatgagttgcggtcattttcttctggtgttatactaacaattttatttcttacag

Basic information

species Vitis vinifera
transcript Vv19s0014g01020.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os09g17840.1 (Oryza sativa), 5'ss of exon 3
TGGACAGCAGGGTTCATATCCTATTAAGCTGTTCTACACCTCCAACATGCCCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttg-------------agctttaagcttgtatacatgagttgcggtcattttcttctggt----------gttatactaacaattttatttcttacag
 || ||||| || |||||||| |||||| |||||||||| || ||||||||||||||| | || ||||| ||  || ||||||| ||||| ||||| ||||| | ||              ||||||    | | |||||||  || |    ||||    || |          ||| ||  |   ||||  ||| || |||
GGGGCAGCAAGGCTCATATCCAATTAAGTTGTTCTACACTTCAAACATGCCCATCATTCTGCACTCTGCACTGATTACCAACCTCTACTTCATATCACAGgtgcgtgctgtaattgtagtggctttagtaatatttacatga-ctgagcaagttttaacatgataactgagcaagttttaacatatatttattttgttgcag

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os09g17830.1 (Oryza sativa), 5'ss of exon 3
TGGACAGCAGGGTTCATATCCTATTAAGCTGTTCTACACCTCCAACATGCCCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagctttaagcttgtatacatgagttgcggtcattttcttctggtgttatactaacaattttatttc-ttacag
 || ||||| || |||||||| |||||| |||||||||| || ||||||||||||||| | || ||||| ||  || ||||||| ||||| ||||| ||||| | || | | |     ||    ||  | |        |  |  ||  || ||  ||  |   ||||||||  || |||
GGGGCAGCAAGGCTCATATCCAATTAAGTTGTTCTACACTTCAAACATGCCCATCATTCTGCACTCTGCACTGATTACCAACCTCTACTTCATATCACAGgtgcgtgcggtattgtagtgc-cgcagtaatatttacattactgatcaagtttttaac--atgtttttattttgttgcag

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g11440.1 (Oryza sativa), 5'ss of exon 4
TGGACAGCAGGGTTCATATCCTATTAAGCTGTTCTACACCTCCAACATGCCCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagctttaagct---tgtatacatgagttgcggtcattttcttctggtgttatactaacaattttat-ttcttacag---
 || || || || ||||| || ||||||||||||||||| || ||||||||||||||| | || ||||| ||  || ||||||| || || |||||||||||   ||| ||| ||      ||  |     || |       |  | ||   || |   | |||||  ||| | ||  |   |   
CGGTCAACAAGGCTCATACCCAATTAAGCTGTTCTACACTTCAAACATGCCCATCATTCTGCATTCTGCACTGATTACCAACCTCTATTTCATATCCCAGgt--ctgaacttcaattccactgctttagcaagataaatctttaatgtttgtgtttagcattaacatgtttgtattgctttggcag

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 3
TGGACAGCAGGGTTCATATCCTATTAAGCTGTTCTACACCTCCAACATGCCCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagctttaagcttgtatacatgagttgcggtcattttcttctggtgtta-tactaaca-attttatttc--ttacag
||| ||||| || |||||||| ||||||||||||||||| || ||||||||||||||  | || ||||| ||  || ||||||| || ||||||||||||||||        | |  |   || |   |||       || ||||    |||| | | ||||   |||||| | |  | ||||
TGGCCAGCAAGGCTCATATCCAATTAAGCTGTTCTACACTTCAAACATGCCCATCATCCTTCACTCTGCGCTGATTACCAACCTCTATTTTATATCCCAGgtacaca---cctcatttctaatgctgcagtaagttatatcttctgtatgtgtaactgctaatgtattttactgctatcacag

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G073498_T02 (Zea mays), 5'ss of exon 3
TGGACAGCAGGGTTCATATCCTATTAAGCTGTTCTACACCTCCAACATGCCCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtac----ttgagctttaagcttgtatacatgagttgcggtcattttcttctggtgtta-tactaaca-attttatttc--ttacag
||| ||||| || |||||||| |||||||| |||||||| || ||||||||||||||| | || ||||| ||  || ||||||| || || |||||||||||||     | |  |  ||   ||||    | |||   |     | | |    |||| | | || |   |||||||| |  | ||||
TGGCCAGCAAGGCTCATATCCAATTAAGCTATTCTACACTTCAAACATGCCCATCATTCTGCACTCTGCACTGATTACCAACCTCTATTTCATATCCCAGgtacgcacctcatttccaatgctgta---gtaagtcatgtcttctgtgtgtatgtgtaaatgctgatgtattttattgctatcacag

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S323_56V6.1 (Physcomitrella patens), 5'ss of exon 4
TGGACAGCAGGGTTCATATCCTATTAAGCTGTTCTACACCTCCAACATGCCCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagctttaa-gcttgtatacatgagttgcggt---cattttcttctggtgt-tatactaacaattttatttcttacag-----------------------------------------------------
||| || || || || |||||||| || || ||||||||||||||||||||||||||| | |||  ||| || || |||||| | ||||| || || |||||| ||    | |    ||||| | ||     | | |    || ||||||  |   |    | || |  | | | |  || ||                                                      
TGGTCAACAAGGATCTTATCCTATCAAACTATTCTACACCTCCAACATGCCCATCATTCTTCAGAGTGCCCTCGTATCCAACTTGTACTTCATTTCACAGgtattttttttctgttacttgtcttcaatctatacagcttgcaatttctttagcaatgcgaagtatcgttgtcaatggtttcaactcattaacttcttggaattaattaaaattcaaaagacttgtcgtcttttcag

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S114_48V6.1 (Physcomitrella patens), 5'ss of exon 4
TGGACAGCAGGGTTCATATCCTATTAAGCTGTTCTACACCTCCAACATGCCCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagctttaagcttgtataca--tgagttgcggtcattttcttctggt-gttatactaacaattttatttcttacag----------
 || || || || || || ||||||||| ||||||||||||||||||||||||||||| | |||   || ||||| |||||| | ||||| || || ||||| |     || |   |||||  ||    |  ||   ||||  |  |||||   |   |    ||    ||  || |    |          
CGGTCAACAAGGATCTTACCCTATTAAGTTGTTCTACACCTCCAACATGCCCATCATTCTCCAGAGCGCCCTTGTCTCCAACTTGTACTTCATTTCACAGgttcgcct-ctctgttcttgttgactgtcgcattcgtgtcaagtaattctgaaagacgtgtctactcacttgcttttgtttgtgtgttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031923|gb|FQ460180.1|FQ460180
EST:     AACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGATACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: AACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|33410560|gb|CF216187.1|CF216187
EST:     CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|71867271|gb|DT016326.1|DT016326
EST:     CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|71890402|gb|DT039457.1|DT039457
EST:     CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAGTG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTG
EST: gi|351035297|gb|FQ459564.1|FQ459564
EST:     CCATCATTCTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAG
EST: gi|161713522|gb|FC064063.1|FC064063
EST:     CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|351019144|gb|FQ429304.1|FQ429304
EST:     AACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGATACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: AACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|351047982|gb|FQ441154.1|FQ441154
EST:     AACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGATACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: AACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|77577442|gb|DV217453.1|DV217453
EST:     CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|349829390|gb|FQ419922.1|FQ419922
EST:     CATCATTCTACAGTCTGCTCTTTGTT-CCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGATACAGTGGAAAATTTCCTTGTAAATCTCT
genomic: CATCATTTTACAGTCTGCTCTT-GTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAA-TTTCCTTGTAAATCTCT
EST: gi|156738579|gb|EV242700.1|EV242700
EST:     CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|110717573|gb|EE093550.1|EE093550
EST:     CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|110729814|gb|EE106178.1|EE106178
EST:     CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|110403185|gb|EC964476.1|EC964476
EST:     TTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: TTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|30129932|gb|CB915271.1|CB915271
EST:     CCATCATTCTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGATACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|351035066|gb|FQ458423.1|FQ458423
EST:     AACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGATACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: AACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|71865798|gb|DT014853.1|DT014853
EST:     CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|351054782|gb|FQ462812.1|FQ462812
EST:     AACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGATACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: AACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|351048096|gb|FQ442066.1|FQ442066
EST:     AACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGATACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: AACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|30297202|gb|CB973996.1|CB973996
EST:     CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAG
EST: gi|351053628|gb|FQ440137.1|FQ440137
EST:     CCATCATTTTACAGTCTGCTCTTGTTTC-AACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGG
EST: gi|161714004|gb|FC063189.1|FC063189
EST:     CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|351024256|gb|FQ423679.1|FQ423679
EST:     AACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGATACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: AACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|110687837|gb|EE065701.1|EE065701
EST:     ATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: ATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|33403746|gb|CF209373.1|CF209373
EST:     CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACCGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|71889203|gb|DT038258.1|DT038258
EST:     CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|110361033|gb|EC924484.1|EC924484
EST:     CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|33403829|gb|CF209456.1|CF209456
EST:     CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|71868913|gb|DT017968.1|DT017968
EST:     CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: CCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|351023126|gb|FQ432509.1|FQ432509
EST:     AACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGATACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: AACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: gi|351029515|gb|FQ436909.1|FQ436909
EST:     AACCTTTACTTTATATCCCAG                         TTGCTGTACAGGAGATACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: AACCTTTACTTTATATCCCAGgtacttgagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG