1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTTCACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGAgttagtgcctcattgatttctttattaaatatcttgcttgtattttaaggcttttgaaattgggatgaaataattttgctctgtgcagtacagttagcattgagattgtcatatatttcttttgcag
species | Vitis vinifera |
transcript | Vv18s0166g00300.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGA TTATACTGCACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGTEST: gi|351043930|gb|FQ431361.1|FQ431361
genomic: CACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGAgttagtgcct ... tcttttgcagTTATACTACACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGT
EST: CACCCCATTGTCGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGA TTATACTGCACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGTEST: gi|349825486|gb|FQ419403.1|FQ419403
genomic: CACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGAgttagtgcct ... tcttttgcagTTATACTACACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGT
EST: CACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGA TTATACTGCACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGTEST: gi|351028553|gb|FQ444834.1|FQ444834
genomic: CACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGAgttagtgcct ... tcttttgcagTTATACTACACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGT
EST: CACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGA TTATACTGCACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGT
genomic: CACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGAgttagtgcct ... tcttttgcagTTATACTACACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGAgttagtgcctcattgatttctttattaaatatcttgcttgtattttaaggcttttgaaattgggatgaaataattttgctctgtgcagtacagttagcattgagattgtcatatatttcttttgcag
- - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - GCTGTT