1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATCATTGAAACTGCTCTTGAAAGTGGTGCGGAACCCAATAAATCGGACGCTTTCACCATTAATGGTCAACCAGGAGATCTATACAATTGTTCAAAACAAGgtaattattcatgatgtttctgagcgaagagatggcatatgcatgtatgtgaaatggactaacataattcatgtgttgcag
species | Vitis vinifera |
transcript | Vv18s0164g00100.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTTCACCATTAATGGTCAACCAGGAGATCTATACAATTGTTCAAAACAAG GGACGTTCAAACTGGTGGTTGATTATGGGGAAACTTATCTTCTTCGCATCAEST: gi|110707628|gb|EE084245.1|EE084245
genomic: TTTCACCATTAATGGTCAACCAGGAGATCTATACAATTGTTCAAAACAAGgtaattattc ... tgtgttgcagGGACGTTCAAACTGGTGGTTGATTATGGGAAAACTTATCTTCTTCGCATCA
EST: TTC-CCATTAAAGGGCCACCAGGAGATCTATACAGTTGTTCCAAGACAAG G-ACGTTCAAAACTGGTGGTTGAATATGGGGAAAACEST: gi|110700922|gb|EE077999.1|EE077999
genomic: T-CACCATTAATGGTCAACCAGGAGATCTATACAATTGTTCAAA-ACAAGgtaattattc ... tgtgttgcagGGACGTTCAAA-CTGGTGGTTGATTATGGG-AAAAC
EST: TTTCACCATTAATGGTCAACCAGGAGATCTATACAATTGTTCAAAACAAG GGACGTTCAAACTGGTGGTTGATTATGAGGAAA-CTTATCTTCTTCGCATC
genomic: TTTCACCATTAATGGTCAACCAGGAGATCTATACAATTGTTCAAAACAAGgtaattattc ... tgtgttgcagGGACGTTCAAACTGGTGGTTGATTATG-GGAAAACTTATCTTCTTCGCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCATTGAAACTGCTCTTGAAAGTGGTGCGGAACCCAATAAATCGGACGCTTTCACCATTAATGGTCAACCAGGAGATCTATACAATTGTTCAAAACAAGgtaattattcatgatgtttctgagcgaagagatggcatatgcatgtatgtgaaatggactaacataattcatgtgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC