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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatttaattttcgatcgtttgattattaagaattttctttggtatgagtagttaattttttttttaatttgttttagcttcttaaaaaaattta...

Basic information

species Vitis vinifera
transcript Vv18s0122g01190.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30135931|gb|CB921269.1|CB921269
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|351049301|gb|FQ429044.1|FQ429044
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|37189590|gb|CF608939.1|CF608939
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCNATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71872246|gb|DT021301.1|DT021301
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71866454|gb|DT015509.1|DT015509
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71870392|gb|DT019447.1|DT019447
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|18458654|gb|BM436932.1|BM436932
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71871903|gb|DT020958.1|DT020958
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|110422203|gb|EC988518.1|EC988518
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTTTATGTTTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|349812463|gb|FQ407082.1|FQ407082
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|77587638|gb|DV222996.1|DV222996
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|349812462|gb|FQ407081.1|FQ407081
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|349808030|gb|FQ402421.1|FQ402421
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAGGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71870289|gb|DT019344.1|DT019344
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71875149|gb|DT024204.1|DT024204
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71869195|gb|DT018250.1|DT018250
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71872390|gb|DT021445.1|DT021445
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|30321835|gb|CD005097.1|CD005097
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|110378901|gb|EC944058.1|EC944058
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|30136340|gb|CB921678.1|CB921678
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|34544994|gb|CF513226.1|CF513226
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71870838|gb|DT019893.1|DT019893
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|37188038|gb|CF607389.1|CF607389
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTTTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|110701263|gb|EE078641.1|EE078641
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|110359145|gb|EC920159.1|EC920159
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71877377|gb|DT026432.1|DT026432
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|37187271|gb|CF606624.1|CF606624
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|110727673|gb|EE104704.1|EE104704
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|27586818|gb|CB009513.1|CB009513
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71871069|gb|DT020124.1|DT020124
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|30125574|gb|CB910913.1|CB910913
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|37188411|gb|CF607760.1|CF607760
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71872295|gb|DT021350.1|DT021350
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71877289|gb|DT026344.1|DT026344
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|37190659|gb|CF610008.1|CF610008
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|77584467|gb|DV221302.1|DV221302
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71867293|gb|DT016348.1|DT016348
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|26266952|gb|CA818015.1|CA818015
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71879402|gb|DT028457.1|DT028457
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|34545986|gb|CF514218.1|CF514218
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|349812002|gb|FQ410799.1|FQ410799
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|37189938|gb|CF609287.1|CF609287
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|30135991|gb|CB921329.1|CB921329
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71873912|gb|DT022967.1|DT022967
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|110688346|gb|EE066794.1|EE066794
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|349822310|gb|FQ412574.1|FQ412574
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|37188583|gb|CF607932.1|CF607932
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|71869029|gb|DT018084.1|DT018084
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|110725319|gb|EE101688.1|EE101688
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|77579649|gb|DV218677.1|DV218677
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|37187855|gb|CF607208.1|CF607208
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|30125704|gb|CB911043.1|CB911043
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
EST: gi|37189435|gb|CF608784.1|CF608784
EST:     TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG                         GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC
genomic: TTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatt ... tcaaaattagGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGgtaagtaatttaattttcgatcgtttgattattaagaattttctttggtatgagtagttaattttttttttaatttgttttagcttcttaaaaaaattta

- - - - - - - - - - - AAGGAG
- - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa